SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80068

Length: 548 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene80068
CGTCGTGACCTTGGCTGTCACTCAGCAGGTAAGGAACAAACTTGGTGTAATAGATCCATATTTCCAGAAGCTGGCAGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAGCTCAATCCCCCCACTGCCAACCGTCGTGACCTTGGCTGTCACTAATTCCCCGTGGACCAGATAAGACATCCACGTAATTAGCAAGGATCTGGCACATTAATTCCTTGCATTTGTCAGCTCTGAACAGTGCCCAATATTATTTAGTTCATCATCATTTTGGTAGATGGATAGTCTATTCTAGTTGATCTCTAGCTATTAGTTTCTTTTTATGCAGTCAGATGAACATTTGTTGTGATGCAATTAATTATTTTTGAGAATCTGCATGCAGTATTTGCACGAATTTGTTTTTGATCCAGTTAGATGATAATGGACATCCCTGGAAACATCAGATATTTTTGAGAATATGCTTGGATCTAGTTAGATGATTATGGACATCCCTGGAAACATACAGATATTTTGAGAATATATATGCTTGGCATGCGTTGCTGCTATTGAG

Ace file of the UniGene sp_v1.1_unigene80068

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RGP2; RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups; K13379 reversibly glycosylated polypeptide/UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.-]	-	-	2.0e-09	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	2.0e-09	65%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Fructose and mannose metabolism	00051		2.0e-09	65%
AutoFact	N-Glycan biosynthesis	00510		2.0e-09	65%
AutoFact	Mucin type O-Glycan biosynthesis	00512		2.0e-09	65%
AutoFact	Various types of N-glycan biosynthesis	00513		2.0e-09	65%
AutoFact	Other types of O-glycan biosynthesis	00514		2.0e-09	65%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		2.0e-09	65%
AutoFact	Glycosaminoglycan biosynthesis - keratan sulfate	00533		2.0e-09	65%
AutoFact	Lipopolysaccharide biosynthesis	00540		2.0e-09	65%
AutoFact	Peptidoglycan biosynthesis	00550		2.0e-09	65%
AutoFact	Glycerolipid metabolism	00561		2.0e-09	65%
AutoFact	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563		2.0e-09	65%
AutoFact	Sphingolipid metabolism	00600		2.0e-09	65%
AutoFact	Glycosphingolipid biosynthesis - lacto and neolacto series	00601		2.0e-09	65%
AutoFact	Glycosphingolipid biosynthesis - globo series	00603		2.0e-09	65%
AutoFact	Glycosphingolipid biosynthesis - ganglio series	00604		2.0e-09	65%
AutoFact	Carotenoid biosynthesis	00906		2.0e-09	65%
AutoFact	Zeatin biosynthesis	00908		2.0e-09	65%
AutoFact	Flavonoid biosynthesis	00941		2.0e-09	65%
AutoFact	Anthocyanin biosynthesis	00942		2.0e-09	65%
AutoFact	Flavone and flavonol biosynthesis	00944		2.0e-09	65%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		2.0e-09	65%
AutoFact	Betalain biosynthesis	00965		2.0e-09	65%
AutoFact	Biosynthesis of type II polyketide products	01057		2.0e-09	65%
AutoFact	Metabolic pathways	01100		2.0e-09	65%
AutoFact	Biosynthesis of secondary metabolites	01110		2.0e-09	65%
AutoFact	Isomerases, Intramolecular transferases (mutases), Transferring other groups.	EC:5.4.99.-	-	2.0e-09	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKS5

Fln msg: your sequence is shorter than subject: 52 - 363

Fln protein: VVTLAVTQQVRNKLGVIDPYFQKLADAMVTWIEAWDELNPPTANRRDLGCH*

Protein Length: 53

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCAGGTAAGGAACAAACTTGGTGTAATAGATCCATATTTCCAGAAGCTGGCAGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAGCTCAATCCCCCCACTGCCAACCGTCGTGACCTTGGCTGTCACTAA___TTCCCCGTGGACCAGATAAGACATCCACGTAATTAGCAAGGATCTGGCACATTAATTCCTTGCATTTGTCAGCTCTGAACAGTGCCCAATATTATTTAGTTCATCATCATTTTGGTAGATGGATAGTCTATTCTAGTTGATCTCTAGCTATTAGTTTCTTTTTATGCAGTCAGATGAACATTTGTTGTGATGCAATTAATTATTTTTGAGAATCTGCATGCAGTATTTGCACGAATTTGTTTTTGATCCAGTTAGATGATAATGGACATCCCTGGAAACATCAGATATTTTTGAGAATATGCTTGGATCTAGTTAGATGATTATGGACATCCCTGGAAACATACAGATATTTTGAGAATATATATGCTTGGCATGCGTTGCTGCTATTGAG

Fln Alignment:

sp_v1.1_unigene80068___LAVTQQVRNKLGVIDPYFQKLADAMVTWIEAWDELNPPTAN
A9NKS5_______________IELSKQVKESLGKVDPYFQKLADAMVTWIEAWDELNPTASN

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
137		66	33		0.997476
138		33	66		0.997476
143	33	66			0.997476
144			33	66	0.997476
190	50	50			1.0
191	50		50		1.0
193			50	50	1.0
194	83	16			0.994517
195		40	60		1.0
196		83		16	0.994517
197	40	20		40	1.0
198	50		16	33	1.0
199			83	16	0.994514
201	66	33			1.0
202		16		83	0.994514
203		66	33		1.0
205		33	50	16	1.0
206	33		66		1.0
208	50		16	33	1.0
210	80			20	0.995493
211			20	80	0.995493
213	80	20			0.995493
215		20		80	0.995493
218	20	80			0.995493
247	85		14		0.993535
248	85			14	0.993535
249		14		85	0.993535
250	85		14		0.993535
252			14	85	0.993535
255		14		85	0.993535
258	83		16		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain