SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80045

Length: 376 nt

UniGene Fasta

>sp_v1.1_unigene80045
GGACTCGGTTGGCAACCTAGTAGGCCTCCAACATCTCTCCTTGACAAGGTGCTCCGCTCTGCCGGCGCTTCCGGACTCGTTTGGTAACCTAGCACGTCTCCAACATCTCAACTTGTCCGAGTGCGACTATCTGCAGGCGCTTCCTGAGTCGGTTGGGAACCTAGCAGGCCTCGAACATCTGGACTTAAGCTATTGCTTGGATCTGCAGAGGCTTCCGTACTCGGTTGGTAACCTAGCACGCCTCCAACATCTCGACTTGTCCCATTGCTATTCTTTGGAGATGCTTCCGTCCTCGGTTGGGAACCTAGCACGCCTCCAACATCTGGCTTTGGGACGGTGTTCCTCTCTGCATACCCTCCCACACTCAGTTGGGGAT

Ace file of the UniGene sp_v1.1_unigene80045

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J2_PINTA	-	-	2.0e-31	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	protein	-	-	3.7618e-32	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	3.7618e-32	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 74 aas, your sequence is shorter than subject: 125 - 1071

Fln protein: DSVGNLVGLQHLSLTRCSALPALPDSFGNLARLQHLNLSECDYLQALPESVGNLAGLEHLDLSYCLDLQRLPYSVGNLARLQHLDLSHCYSLEMLPSSVGNLARLQHLALGRCSSLHTLPHSVGD

Protein Length: 126

Fln nts: GGACTCGGTTGGCAACCTAGTAGGCCTCCAACATCTCTCCTTGACAAGGTGCTCCGCTCTGCCGGCGCTTCCGGACTCGTTTGGTAACCTAGCACGTCTCCAACATCTCAACTTGTCCGAGTGCGACTATCTGCAGGCGCTTCCTGAGTCGGTTGGGAACCTAGCAGGCCTCGAACATCTGGACTTAAGCTATTGCTTGGATCTGCAGAGGCTTCCGTACTCGGTTGGTAACCTAGCACGCCTCCAACATCTCGACTTGTCCCATTGCTATTCTTTGGAGATGCTTCCGTCCTCGGTTGGGAACCTAGCACGCCTCCAACATCTGGCTTTGGGACGGTGTTCCTCTCTGCATACCCTCCCACACTCAGTTGGGGAT

Fln Alignment:

sp_v1.1_unigene80045___DSVGNLVGLQHLSLTRCSALPALPDSFGNLARLQHLNLSECDYLQALPESVGNLAGLEHLDLSYCLDLQRLPYSVGNLARLQHLDLSHCYSLEMLPSSVGNLARLQHLALGRCSSLHTLPHSVGD
C0PQE2_______________DSVGHLTGLQTLDLIGCSTLQMLPDSVGNLTGLQKLDLSWCSTLQMLPDSVGNLTGLQTLALGWCSTLQTLPDSVGNLTGLQTLDLIECSTLQTLPDSVGNLTGLQTLYLSRCSTLQTLPDSVGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain