SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80028

Length: 366 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

>sp_v1.1_unigene80028
ATGGGCGGGAGTTCAGGGACAATGGGCTAGCAGCCTCGGCTTCTGCTAATCGGACACAGGTTCCAGCTTTGAATATGAAGCTCTGGTATGCTCCATATCTTGAGCTTCCAGAAGGTGGTGGGATGGAGGGAGCAACCCTTGTGTCCATTAGGCCTAGCGATCGACCGATTAAGAAGGATACAGAAGCTTTTCTAGCAGGGGCATTTGATGAGCCATTTGGCGCGGCTGCGAAGGAAATGGTGAAGAAGAGGACTTACCTTTTGGAAATGAATTCTTTCTAGCTGATGCAGAACAGAAGATAATGGATCTTCGACACAAGAAAGTCCAACCTTATGTTCTGGGACAATACTCTGAGATTCTGTTTTC

Ace file of the UniGene sp_v1.1_unigene80028

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	f-box domain containing protein	-	-	5.12315e-42	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW74

Fln msg: your sequence is shorter than subject: 93 - 361

Fln protein: GREFRDNGLAASASANRTQVPALNMKLWYAPYLELPEGGGMEGATLVSIRPSDRPIKKDTEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNSF*

Protein Length: 94

Fln nts: ATGGGCGGGAGTTCAGGGACAATGGGCTAGCAGCCTCGGCTTCTGCTAATCGGACACAGGTTCCAGCTTTGAATATGAAGCTCTGGTATGCTCCATATCTTGAGCTTCCAGAAGGTGGTGGGATGGAGGGAGCAACCCTTGTGTCCATTAGGCCTAGCGATCGACCGATTAAGAAGGATACAGAAGCTTTTCTAGCAGGGGCATTTGATGAGCCATTTGGCGCGGCTGCGAAGGAAATGGTGAAGAAGAGGACTTACCTTTTGGAAATGAATTCTTTCTAG___CTGATGCAGAACAGAAGATAATGGATCTTCGACACAAGAAAGTCCAACCTTATGTTCTGGGACAATACTCTGAGATTCTGTTTTC

Fln Alignment:

sp_v1.1_unigene80028___REFRDNGLAASASANRTQVPALNMKLWYAPYLELPEGGGMEGATLVSIRPSDRPIKKDTEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNSF
A9NW74_______________REFRDKPLAASATASRTQVPALNMKLWYAPYLELPEGGGMEGATLVSIRPSDRPIKKDAEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain