SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79897

Length: 278 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene79897
GCGGTCAAGAAGAAACATGGCGTCTATCTCGCTTGTTCTCTTCTTGACCGCGCTTGTTCTCTTATCGACCGTGGCTTGCTCCTTCGGTGATGCAAGTTCGGTTGATGGAATCGCTAGAAGACCTCCCATGGGGTGGAACTCTTGGAATAAATTTGGTTGCGATATCCAACGAGAAAGTAATCAAGGAAACTTGCTGATGCGCTGATCTCAACAGGTTTTAGTGAACTGGGCTATAAATACGTTAATTTAGATGATTGCTGGGCTGAGTACCAGCGAGA

Ace file of the UniGene sp_v1.1_unigene79897

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-galactosidase 1 n=1 Tax=Pisum sativum RepID=Q5ZP79_PEA	-	-	9.0e-13	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKE1

Fln msg: Separated hits, possible frame ERROR between 175 and 184, Distance to subject end: 132 aas, atg_distance in limit (1-15): atg_distance = 5, your sequence is shorter than subject: 87 - 228

Fln protein: MASISLVLFLTALVLLSTVACSFGDASSVDGIARRPPMGWNSWNKFGCDIQRxxxxRKLADALISTGFSELGYKYVNLDDCWAEYQR

Protein Length: 88

Fln nts: GCGGTCAAGAAGAAAC_-_ATGGCGTCTATCTCGCTTGTTCTCTTCTTGACCGCGCTTGTTCTCTTATCGACCGTGGCTTGCTCCTTCGGTGATGCAAGTTCGGTTGATGGAATCGCTAGAAGACCTCCCATGGGGTGGAACTCTTGGAATAAATTTGGTTGCGATATCCAACGAGAxxxxxxxxxAAGGAAACTTGCTGATGCGCTGATCTCAACAGGTTTTAGTGAACTGGGCTATAAATACGTTAATTTAGATGATTGCTGGGCTGAGTACCAGCGAGA

Fln Alignment:

sp_v1.1_unigene79897___DGIARRPPMGWNSWNKFGCDIQRExxxRKLADALISTGFSELGYKYVNLDDCWAEYQR
B8LKE1_______________NGLARTPPMGWNSWNHFGCNIDEKxxxRKTADALISTGFKNLGYEYVNIDDCWAEHKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain