SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79858

Length: 618 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene79858

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATL4H; ATL4H; protein binding / zinc ion binding	-	-	9.0e-12	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	ring finger 1	-	-	8.61799e-43	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	8.61799e-43	63%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	8.61799e-43	63%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	8.61799e-43	63%

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
263		33		66	0.997461
265			66	33	0.997471
273		33		33	0.997752
276			33	66	0.997454
277			33	66	0.997453
279			66	33	0.997476
281	66			33	0.997476
282		33		66	0.997476
283	33			66	0.997476
301			25	75	0.996474
302			75	25	0.996474
304	25			75	0.996474
305		25	75		0.996474
306	75			25	0.996474
307	75	25			0.996473
308	25	75			0.996473
343			20	80	0.995495
344	80			20	0.995495
345		80	20		0.995495
348		25	75		0.996478
349		25	75		0.996478
351		66		33	0.997452
353	66		33		0.997452
355		66		33	0.997452
356		66	33		0.997452
357	66			33	0.997452
362			66	33	0.997452
363		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain