SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79846

Length: 452 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene79846
TCTGCATGCCCATGTTTCAGATCTTGACTGGAATCAATTCGATTTTGTTCTATGCCCCAGTTCTTTTTGGGAGTTTGGGCTTTGGTGCGAATGCTTCCCTGTACTCGTCTGTTTTGACCGGAGCTGTTCTTGTGCTTTCTACCCTCGTATCAATTGCCACTGTCGACAAGTGGGGCCGCAGACCCTTGCTCCTTGGTGGTGGCATTCAGATGATAGTATGTCAGGTTGCCGTTGGCATAATCCTGGGCCTAAAGTTTGGAGGAGATAAACAACTATCCAAAGGCTTCTCAGCACTGTTGGTAACAGCCATCTGTTTATTTGTGGCTGCATTTGGGTGGTCATGGGGTCCTCTTGGATGGACCGTGCCAAGTGAAATTTTCCCACTAGAAACACGCTCTGCTGGACAGGCCATAACTGTCTCTGTGAACCTTCTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene79846 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose transporter (Fragment) n=1 Tax=Saccharum hybrid cultivar H65-7052 RepID=Q4U261_9POAL	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	hexose transporter	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate transport	GO:0008643	Biological Process	87%
Blast2go	carbohydrate transmembrane transporter activity	GO:0015144	Molecular Function	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	Sugar/inositol transporter	IPR003663	-	87%
Blast2go	General substrate transporter	IPR005828	-	87%
Blast2go	Sugar transporter, conserved site	IPR005829	-	87%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	87%
Blast2go	Major facilitator superfamily domain	IPR020846	-	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB82

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 73 aas, atg_distance in limit (1-15): atg_distance = 4, your sequence is shorter than subject: 147 - 226

Fln protein: MPMFQILTGINSILFYAPVLFGSLGFGANASLYSSVLTGAVLVLSTLVSIATVDKWGRRPLLLGGGIQMIVCQVAVGIILGLKFGGDKQLSKGFSALLVTAICLFVAAFGWSWGPLGWTVPSEIFPLETRSAGQAITVSVNLLRSE*

Protein Length: 148

Fln nts: TCTGC_-_ATGCCCATGTTTCAGATCTTGACTGGAATCAATTCGATTTTGTTCTATGCCCCAGTTCTTTTTGGGAGTTTGGGCTTTGGTGCGAATGCTTCCCTGTACTCGTCTGTTTTGACCGGAGCTGTTCTTGTGCTTTCTACCCTCGTATCAATTGCCACTGTCGACAAGTGGGGCCGCAGACCCTTGCTCCTTGGTGGTGGCATTCAGATGATAGTATGTCAGGTTGCCGTTGGCATAATCCTGGGCCTAAAGTTTGGAGGAGATAAACAACTATCCAAAGGCTTCTCAGCACTGTTGGTAACAGCCATCTGTTTATTTGTGGCTGCATTTGGGTGGTCATGGGGTCCTCTTGGATGGACCGTGCCAAGTGAAATTTTCCCACTAGAAACACGCTCTGCTGGACAGGCCATAACTGTCTCTGTGAACCTTCTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene79846___MPMFQILTGINSILFYAPVLFGSLGFGANASLYSSVLTGAVLVLSTLVSIATVDKWGRRPLLLGGGIQMIVCQVAVGIILGLKFGGDKQLSKGFSALLVTAICLFVAAFGWSWGPLGWTVPSEIFPLETRSAGQAITVSVNLL
D5AB82_______________MPMFQILTGINSILFYAPVLFGSLGFGKNASLYSSVLTGAVLVLSTLVSIATVDRWGRRPLLLAGGIQMIVCQVAVGIILGLKFGGDKQLSKGFSALLVTAICLFVAAFGWSWGPLGWTVPSEIFPLETRSAGQAITVSVNLL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
253	16	83			0.994512
347		85		14	0.993533
357		16	83		0.994512
358		16	83		0.994512
362		83	16		0.994512
363	83			16	0.994512
364		16		83	0.994512
365	16			83	0.994512
371		83	16		0.994512
397	25			50	0.995533
399	25		75		0.996481
401			75	25	0.996486
402		75	25		0.996473
404		25		75	0.996473
408	75	25			0.996474
412	75		25		0.996474
413	75		25		0.996474
416	25		75		0.996473
417	75	25			0.996473
418	75		25		0.996473
419	25			75	0.996473
420		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain