SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79809

Length: 1114 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene79809 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate decarboxylase n=2 Tax=Pinaceae RepID=A0EJ89_PINPS	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	glutamate decarboxylase	-	-	82%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	82%
Blast2go	Glutamate decarboxylase	IPR010107	-	82%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	82%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTD1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 314 - 509

Fln protein: RVSHQISFDLSVH*IGLTILSYLHAEIVFVVMIVDCDDGCRWETPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKHDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMCNCAANAKTLADGLMRTGRFNILSKEVGVPLVAFSLKDSSRHDEFEISDHLRRFGWIVPAYTMAPDAQHVTLLRVVVREDFNRSLAERLVRDIEKVLQELDALPPKLVREVTASLAERHPELKEDKDSGAWKLNSSNVFHEIVNSQKAVKAWKKFVAQKPNRIC*

Protein Length: 315

Fln nts: AGGGTTAGCCATCAAATCTCCTTCGATTTATCTGTTCATTGAATAGGACTGACCATTCTCAGTTATTTGCACGCTGAAATTGTGTTTGTGGTCATGATCGTCGATTGCGACGATGGTTGCAGGTGGGAGACGCCCATACATGTGGACGCGGCGAGCGGCGGATTTATTGCACCGTTCCTTTACCCTGATTTGGAATGGGATTTCCGGCTTCCATTGGTGAAGAGCATAAACGTCAGCGGGCACAAGTATGGCCTCGTCTATGCCGGAATCGGATGGGTTATCTGGAGAGCAAAGCACGACCTCCCTGAAGAGCTTATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACCTTCACCCTCAACTTCTCCAAAGGTGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTTGAGGGCTATCGAAATATCATGTGTAACTGCGCGGCCAACGCCAAGACTCTGGCCGATGGTCTGATGAGGACCGGGCGGTTCAACATACTGTCGAAAGAGGTGGGGGTTCCTCTGGTGGCATTCTCGCTCAAGGACAGTAGCAGGCACGATGAGTTTGAGATTTCTGACCACCTGAGAAGGTTCGGGTGGATCGTGCCCGCCTACACCATGGCTCCCGACGCGCAGCACGTCACCCTTCTGCGCGTGGTGGTTCGCGAAGATTTCAACCGGAGTCTGGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCAGGAGCTTGACGCGCTTCCTCCAAAGTTAGTGAGGGAAGTGACCGCTTCTCTGGCGGAAAGGCACCCTGAACTCAAAGAAGACAAAGACTCTGGCGCCTGGAAGTTGAATTCGTCAAATGTGTTTCATGAGATCGTTAACTCTCAAAAAGCCGTAAAAGCATGGAAGAAATTTGTTGCACAGAAGCCTAATCGAATTTGCTGA___AAATCCTAATCCGATTATTATCTTTCATTTTAATTCCTGGGCCCGTGTGGTTTTTTTCGAAATTTAAACTTCGTAAACTTTGGGGAGTACATAATCCTTGTCGAGTTATAATGGTGTCGTAGGAATAGTACTAGTAAAGTAAGTTTTTAAATCCTTTCAGAATTTTATGGCC

Fln Alignment:

sp_v1.1_unigene79809___WETPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKHDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMCNCAANAKTLADGLMRTGRFNILSKEVGVPLVAFSLKDSSRHDEFEISDHLRRFGWIVPAYTMAPDAQHVTLLRVVVREDFNRSLAERLVRDIEKVLQELDALPPKLVREVTASLAERHPELKE--DKDSGAWKLNSSNVFHEIVNSQKAVKAWKKFVAQKPNRIC
C0PTD1_______________WDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMSNCAANAKALADGLVRTGRFDILSKEVGVPLVAFSLKDNSKHDEYEIADHLRRYGWIVPAYTMAPDAQQVTLLRVVVREDFNRSLAERLVRDIEKVLHELDALPSKLVTEVTASLVESHPELKEVKDIDIDSTKLNSCHVFNEVLNSQKAVKAWKKFVAQKANRVC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain