SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79768

Length: 556 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene79768
CTGAATGTGAGATAATATTATGTGATTTGGCTGCATGCCTCCAGTTAGAAATGAATTAAGAAAATACCATATATATCAACTGGGTTTTGAAAACAGTAAGAAATACAGTAACCATTGTTGTTCAAATGCATGCAGTATGGGAGCAGACAAGGCAGCCTCCAACCTGCAGAATGCTCTCCGAGGTGCACATCAAGGTGCTCAGCCACAGCTTACCAGAAGCCGTGCTTGTTCTACTGTAACAAGTGCTGTGCAAAGTGTCTGTGTGTTCCTCCAGGAACATACGGGAACAAGCAGATGTGCCCCTGCTACAACAACTGGAAGACCAAGAGAGGAGGCCCCAAGTGCCCTTAGATTTGGTTACTCCTCTCACTTTTATATCGTGTTGGACTACTACCTACGCCTCATTCTATCAATTTGCTTATTCTAATAAGCTCTCTAATCCTGACTGATACTATCAATTTGCCTATTTCTATCTGATCAGCTCTCTAATCCTGACTGGGAGCTTGTTGCATTGTAATTGCTATGTTCTGTAATTGAAAGTTGGTAGTTTAAACGT

Ace file of the UniGene sp_v1.1_unigene79768

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin regulated protein [Medicago truncatula]	-	-	3.0e-34	81%
FL-Next	tr=GASA5-like protein; Picea mariana (Black spruce) (Abies mariana).	-	-	0.0	73%
Blast2go	gibberellin induced protein	-	-	5.85755e-36	87%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: O65066

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 74 - 110

Fln protein: MQYGSRQGSLQPAECSPRCTSRCSATAYQKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP*

Protein Length: 75

Fln nts: CTGAATGTGAGATAATATTATGTGATTTGGCTGCATGCCTCCAGTTAGAAATGAATTAAGAAAATACCATATATATCAACTGGGTTTTGAAAACAGTAAGAAATACAGTAACCATTGTTGTTCAAATGC_-_ATGCAGTATGGGAGCAGACAAGGCAGCCTCCAACCTGCAGAATGCTCTCCGAGGTGCACATCAAGGTGCTCAGCCACAGCTTACCAGAAGCCGTGCTTGTTCTACTGTAACAAGTGCTGTGCAAAGTGTCTGTGTGTTCCTCCAGGAACATACGGGAACAAGCAGATGTGCCCCTGCTACAACAACTGGAAGACCAAGAGAGGAGGCCCCAAGTGCCCTTAGATTTGGTTACTCCTCTCACTTTTATATCGTGTTGGACTACTACCTACGCCTCATTCTATCAATTTGCTTATTCTAATAAGCTCTCTAATCCTGACTGATACTATCAATTTGCCTATTTCTATCTGATCAGCTCTCTAATCCTGACTGGGAGCTTGTTGCATTGTAATTGCTATGTTCTGTAATTGAAAGTTGGTAGTTTAAACGT

Fln Alignment:

sp_v1.1_unigene79768___QYGSRQGSLQPAECSPRCTSRCSATAYQKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
O65066_______________QYG--EGSLRPSECGQRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTFGNKQVCPCYNNWKTQQGGPKCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain