SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79762

Length: 1244 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene79762

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartic proteinase nepenthesin-1, putative n=1 Tax=Ricinus communis RepID=B9ST28_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	aspartyl protease family protein	-	-	73%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase A1	IPR001461	-	73%
Blast2go	Peptidase aspartic, active site	IPR001969	-	73%
Blast2go	Peptidase aspartic, catalytic	IPR009007	-	73%
Blast2go	Peptidase aspartic	IPR021109	-	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUE4

Fln msg: Overlapping hits, possible frame ERROR between 119 and 107, and possible frame ERROR between 736 and 763, and possible frame ERROR between 906 and 917, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 395 - 485

Fln protein: S*PWLSLNIYSTLDVQTALKVARGESVETAKGETxxxxxxSIPLVHRDAMKGSRNGKELSYKERMQQRLKRDAARVAAINSRLELAVNGIKRSSLRPDSSSASSMSESDFQSPVVSGMDQGSGEYFSRIGVGSPQRDQLMVLDTGSDVSWIQCNPCSDCYQQADPIYTPALSSTFKLVGCQASLCQQLDVSGCSRNGSCMYQVSYGDGSYTLGNFATETLTLGGTTVPNMAIGCGHDNEGLFVGxxxxxxxxxxALSFPSQLTDESGKIFSYCLVDRDSESSSTLQFGRAAVPNGAVVAPMxxxxVVSLFDTCYDLSSKDSVDVPTVGFHFPGGGSMSLPAKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGTRVSFDRVNNQVGFAVNKC*

Protein Length: 396

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATATACAGTACTCTGGATGTGCAGACCGCTCTGAAAGTTGCCAGGGGGGAATCTGTAGAAACTGCTAAGGGGGAAACCxxxxxxxxxxxxxxxxxxTCGATCCCTCTGGTTCACAGAGATGCAATGAAGGGAAGCCGTAATGGTAAGGAACTTAGCTACAAGGAACGCATGCAGCAAAGGCTGAAGCGAGATGCGGCACGGGTGGCCGCCATTAACTCACGGCTGGAGCTTGCCGTGAACGGGATCAAACGTTCGAGTCTCAGGCCCGACTCCTCATCGGCTTCTAGCATGTCGGAGTCTGACTTCCAGAGCCCCGTGGTCTCCGGCATGGACCAAGGTAGCGGCGAATACTTCTCCCGGATCGGTGTCGGTTCTCCCCAGCGCGACCAGCTTATGGTGCTCGACACCGGCTCTGATGTGAGCTGGATCCAGTGCAACCCCTGTTCGGATTGTTACCAGCAAGCTGACCCCATTTACACCCCGGCGCTCTCTTCGACCTTTAAGTTAGTCGGCTGCCAGGCGAGCCTCTGCCAGCAGCTCGACGTCTCCGGGTGCAGTCGCAACGGGAGCTGCATGTACCAGGTGAGCTACGGCGACGGATCGTACACGTTGGGGAACTTCGCAACGGAGACGCTAACACTCGGGGGGACAACGGTGCCGAACATGGCCATCGGCTGTGGCCACGATAACGAGGGACTGTTCGTCGGTGxxxxxxxxxxxxxxxxxxxxxxxxxxxGGGCGTTGTCGTTCCCTTCGCAGTTAACGGACGAAAGCGGTAAAATATTTTCCTACTGTCTCGTAGACCGTGACTCCGAATCCTCGAGCACTCTCCAGTTCGGCCGGGCCGCGGTGCCCAACGGAGCCGTGGTAGCGCCGATGxxxxxxxxxxxxGTTGTCTCGCTCTTCGACACCTGCTACGATCTCTCCTCCAAAGATTCCGTCGACGTGCCGACCGTCGGTTTCCATTTTCCCGGCGGCGGCAGTATGTCGCTTCCGGCGAAGAATTATCTGGTTCCCGTCGACTCGATGGGCACTTTCTGTTTCGCCTTTGCGCCGACGTCGTCGAGTCTGTCTATTGTCGGGAATATTCAGCAGCAGGGAACCCGAGTTTCGTTTGACCGTGTTAATAATCAAGTGGGATTTGCCGTCAACAAGTGCTGAATCCCGTCAAAATCAAGTGGGTTTTGCTGTGAACAAGCGCTGATTTCCGTCAAGAGGAAAT

Fln Alignment:

sp_v1.1_unigene79762___NIYSTLDVQTALKVARGESVETAKGETLxxxxWSIPLVHRDAMKGSRN-GKELSYKERMQQRLKRDAARVAAINSRLELAVNGIKRXXXXXXXXXXXXXXXXXXXXPVVSGMDQGSGEYFSRIGVGSPQRDQLMVLDTGSDVSWIQCNPCSDCYQQADPIYTPALSSTFKLVGCQASLCQQLDVSGCSRNGSCMYQVSYGDGSYTLGNFATETLTLGGTTVPNMAIGCGHDNEGLFVGAxxxxxxxxxALSFPSQLTDESGKIFSYCLVDRDSESSSTLQFGRAAVPNGAVVAPMLxxxxVSLFDTCYDLSSKDSVDVPTVGFHFPGGGSMSLPAKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGTRVSFDRVNNQVGFAVNKC
A9NUE4_______________DIYSTLDVQATLRVARGEVVQPAKEETLxxxxWSIPLVHRDAMKGNSNKNNELSYAERMQQRLKRDAARVAAINSRLELAVNGIKRSSLKPDSSSSFTMAESDFQSPVVSGMDQGSGEYFSRIGVGAPRRDQLMVLDTGSDVTWIQCEPCSDCYQQSDPIYNPALSSSYKLVGCQANLCQQLDVSGCSRNGSCLYQVSYGDGSYTQGNFATETLTLGGAPLQNVAIGCGHDNEGLFVGAxxxxxxxxxSLSFPSQLTDENGKIFSYCLVDRDSESSSTLQFGRAAVPNGAVLAPMLxxxxVSLFDTCYDLSSKESVDVPTVVFHFSGGGSMSLPAKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGIRVSFDRANNQVGFAVNKC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
369		70		30	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain