SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79651

Length: 270 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene79651
CGTCGTGACCTTGGCTGTCACTCAATCATCAGGAAAGGACAAGTTACTACGTCTAAATGCAGATTTTGACAATTTCAGGAAGAGAGCAGAGAAAGAACGACTAAGTTTGGCATCTAACATTCAAGCTACACGAAGCAATTATGCGTGAGGATTCTACATTATTTGGAGAAGGCATAATTATTGAAGATTCAGGAGAGGATTTATTCTTGGCGACAAGCTTTTGCGCCCTGCTATGGTTAAAGTGTCAGCAGGACCAGGTCCTGCAAAAGC

Ace file of the UniGene sp_v1.1_unigene79651

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GrpE protein homolog n=1 Tax=Picea sitchensis RepID=A9NPB5_PICSI	-	-	9.0e-12	100%
FL-Next	sp=GrpE protein homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPB5

Fln msg: Separated hits, possible frame ERROR between 124 and 126, Distance to subject end: 39 aas, your sequence is shorter than subject: 90 - 338

Fln protein: VVTLAVTQSSGKDKLLRLNADFDNFRKRAEKERLSLASNIxxLHEAIMREDSTLFGEGIIIEDSGEDLFLATSFCALLWLKCQQDQVLQK

Protein Length: 91

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATCAGGAAAGGACAAGTTACTACGTCTAAATGCAGATTTTGACAATTTCAGGAAGAGAGCAGAGAAAGAACGACTAAGTTTGGCATCTAACATTCAxxxGCTACACGAAGCAATTATGCGTGAGGATTCTACATTATTTGGAGAAGGCATAATTATTGAAGATTCAGGAGAGGATTTATTCTTGGCGACAAGCTTTTGCGCCCTGCTATGGTTAAAGTGTCAGCAGGACCAGGTCCTGCAAAAGC

Fln Alignment:

sp_v1.1_unigene79651___VVTLAVTQSSGKDKLLRLNADFDNFRKRAEKERLSLASNIQxLHEAIMREDSTLFGEGIIIED
A9NPB5_______________VAALTEEASRGKDKLLRLNADFDNFRKRAEKERLSLASNIQxLHEAILHEDSTSFEEGIIIEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain