SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79559

Length: 399 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene79559
CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCATATTCATGTCCAATGTGCTCCAAGTCAGTCTGTGATATGTCCATAATCTGGGAACAACTAGACGAAGAGATTGCAGCAACACCTATGCCTTATGACTATCAAAATAAGATGGTCTGGATCCTATGCAATGATTGTGACATGTTCTCTGAGGTCCAGTTCCATATTGTTGCACAGAAGTGTTTAAAGTGCAAATCTTACAATACTCGCCAAACAAGGGGACCAGGCCAATAGTGGTACAGTCGTAGGAATCATGGAGTATTTGTATTTATAATGTCAAGTTTGTATCCTCAGTCACGGCTCTGTCATATGCTCAGTAATCTAGCAGTGATTAGAACAGGATTCAGTTGTAGA

Ace file of the UniGene sp_v1.1_unigene79559

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SCJ9_RICCO	-	-	9.0e-30	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	zinc finger	-	-	4.58108e-38	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg: your sequence is shorter than subject: 93 - 273

Fln protein: RRDLGCHSRRDLGCHSYSCPMCSKSVCDMSIIWEQLDEEIAATPMPYDYQNKMVWILCNDCDMFSEVQFHIVAQKCLKCKSYNTRQTRGPGQ*

Protein Length: 94

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCATATTCATGTCCAATGTGCTCCAAGTCAGTCTGTGATATGTCCATAATCTGGGAACAACTAGACGAAGAGATTGCAGCAACACCTATGCCTTATGACTATCAAAATAAGATGGTCTGGATCCTATGCAATGATTGTGACATGTTCTCTGAGGTCCAGTTCCATATTGTTGCACAGAAGTGTTTAAAGTGCAAATCTTACAATACTCGCCAAACAAGGGGACCAGGCCAATAG___TGGTACAGTCGTAGGAATCATGGAGTATTTGTATTTATAATGTCAAGTTTGTATCCTCAGTCACGGCTCTGTCATATGCTCAGTAATCTAGCAGTGATTAGAACAGGATTCAGTTGTAGA

Fln Alignment:

sp_v1.1_unigene79559___DLGCHS-YSCPMCSKSVCDMSIIWEQLDEEIAATPMPYDYQNKMVWILCNDCDMFSEVQFHIVAQKCLKCKSYNTRQTRGPGQ
D5A9X0_______________EMQMHSQYSCPMCSKSVCDMSLIWEQLDQEIAATPMPNDYQDKMVWILCNDCDTFSEVQFHIVAQKCLKCKSYNTRQTRGPGQ

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
25	25	75			0.996486
27	25			75	0.99649
28	25	75			0.99649
29	25		75		0.99649
34	25	75			0.99649
35	25			75	0.99649
36	25			75	0.996479
37	25		75		0.996479
40	33			66	0.997452
41		33	66		0.997452
44	66			33	0.997452
47	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain