SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79503

Length: 540 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene79503
CGTCGTGACCTTGGTGTCACTATCCACAATCCTTAGGTCAACAGCCTGTAACATTTTTCCGAGAGGTGCTAGCTTTATGTGACCATCCAGCTCTTTTGGCCTTGGCTGTCACTGCATCTTTAGTTCTGATTCCATATCGAGGGCATGGCAAATTCTAGATGGCATTCCAGGAAGAGCTACTGGAGCTTACAGTCACAGTCAGGGTATCAAGGCATTACGTGATGCAATTGCTGCTGGTATTGCTGAACGTGATGGTTTTCCATCCAATTCAGAGGACCTTTTTTTGACTGATGGTGCAAGTCCTGGGGTTCATATGATGATGCAACTTCTTATAAGGTCAGAGAAGGATGGAATTCTTTGCCCAATTCCGCAGTACCCACTTTACTCTGCATCCATTGCTCTTCATGGTGGGACCTTGGTTCCATACTACCTTAATGAGGCAACAGGATGGGGTTTAGAAATTTCTGAGGTTAAACAACAACTAGAAGCAGCACGCTTAAATGGTATCGATGTTCGGGCTTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene79503

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alanine aminotransferase 2 n=5 Tax=Poaceae RepID=ALA2_PANMI	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	alanine aminotransferase	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring nitrogenous groups	GO:0016769	Molecular Function	0.0	88%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	88%

Source	InterPros	Term	Type	Identity
Blast2go	Aminotransferase, class I/classII	IPR004839	-	88%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	88%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXT3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 260 aas, your sequence is shorter than subject: 179 - 480

Fln protein: VVTLVSLSTILRSTACNIFPRGASFM*PSSSFGLGCHCIFSSDSISRAWQILDGIPGRATGAYSHSQGIKALRDAIAAGIAERDGFPSNSEDLFLTDGASPGVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLNEATGWGLEISEVKQQLEAARLNGIDVRAFAVSDR

Protein Length: 180

Fln nts: CGTCGTGACCTTGGTGTCACTATCCACAATCCTTAGGTCAACAGCCTGTAACATTTTTCCGAGAGGTGCTAGCTTTATGTGACCATCCAGCTCTTTTGGCCTTGGCTGTCACTGCATCTTTAGTTCTGATTCCATATCGAGGGCATGGCAAATTCTAGATGGCATTCCAGGAAGAGCTACTGGAGCTTACAGTCACAGTCAGGGTATCAAGGCATTACGTGATGCAATTGCTGCTGGTATTGCTGAACGTGATGGTTTTCCATCCAATTCAGAGGACCTTTTTTTGACTGATGGTGCAAGTCCTGGGGTTCATATGATGATGCAACTTCTTATAAGGTCAGAGAAGGATGGAATTCTTTGCCCAATTCCGCAGTACCCACTTTACTCTGCATCCATTGCTCTTCATGGTGGGACCTTGGTTCCATACTACCTTAATGAGGCAACAGGATGGGGTTTAGAAATTTCTGAGGTTAAACAACAACTAGAAGCAGCACGCTTAAATGGTATCGATGTTCGGGCTTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene79503___IFSSDSISRAWQILDGIPGRATGAYSHSQGIKALRDAIAAGIAERDGFPSNSEDLFLTDGASPGVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLNEATGWGLEISEVKQQLEAARLNGIDVRAFAV
A9NXT3_______________LFPADVIARAKHYLAMTTG-GLGAYSDSRGLPGIRKEVAEFIERRDGYPSDPDLIFLTDGASKGVMQILNTIIRDEKDGILVPVPQYPLYSAAISLFGGTLVPYYLDESANWGLDVGDLRKSVLEARYKGITVRAMVI

SNPs (tot: 5)

Position	A %	G %	T %	Probability
150	66	33		0.997458
156	66		33	0.997459
157	66		33	0.997467
158		33	66	0.997464
159		33	66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain