SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79431

Length: 1019 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene79431 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EIF4G; EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G); translation initiation factor; K03260 translation initiation factor eIF-4F	-	-	3.0e-36	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	eukaryotic translation initiation factor 4g	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to virus	GO:0009615	Biological Process	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Initiation factor eIF-4 gamma, MA3	IPR003891	-	0.0	63%
Blast2go	Armadillo-type fold	IPR016024	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC81

Fln msg: Distance to subject end: 52 aas, atg_distance in limit (1-15): atg_distance = 5, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 272 - 395

Fln protein: VSCRFPHGHAQPLPYAKSALADIPPFTSLSTRRTGAGPIAGCNSDRMPVGMRDEILTRTCAAEKPSFAKYCVQERNVLDNDRREFKNSCSSGDRGGKTANAEFQLQEHSSQRSLSSQLTEVQLRKKAEMAIEEYYSVRDLKEAASCVDDLKAPLFHSNMVSLWMLDSFVRKDVEVDLLGNLLTHLCKSEPFLLNQGQLTEGLEIVLFSLEDAVVDAPKAPEFLGRILAKLVVEGIFFIQDIARAIKDGGTEPGSLLENGHAIEVLGTVLEDI

Protein Length: 273

Fln nts: ACTGCAACAAAGAAGTCTAACTCTCTTCCTCCAAAAGTCAATGGGCTTCTTTCAAAACCTCCAATTTCACTAGCTTCAAATGTTAATAGTTCCGAAGAGTCATCTTCGGTGACTACAATAGCTTTATCTGGAGAGAGTTCCAGTTCAATGGTTCAACAGTCCTTTCCATTACAGTTTGGAAGCTTCAGTCCACTCTCAGTGAGTGAGTTGCAGGTTCCCGCACGGACATGCTCAGCCTCTGCCATATGCTAAGAGTGCTCTAGCAGATATTCCACCATTCACATCTTTGAGTACTAGACGAACAGGTGCAGGTCCGATTGCAGGTTGCAATTCTGACCGGATGCCAGTTGGTATGAGAGATGAAATTTTGACAAGGACTTGTGCTGCAGAAAAGCCTTCATTTGCAAAATATTGTGTCCAGGAAAGAAATGTTTTGGATAATGACAGACGAGAGTTTAAGAATTCATGCTCATCAGGTGACAGGGGTGGCAAGACTGCAAATGCTGAATTTCAACTGCAAGAACATTCTTCTCAAAGAAGTCTGAGTTCACAACTCACTGAGGTTCAACTTAGGAAAAAGGCTGAAATGGCAATCGAAGAATATTACAGTGTGAGAGATTTGAAGGAGGCAGCTTCTTGTGTAGATGACCTTAAAGCACCATTGTTCCATTCAAATATGGTTTCGCTTTGGATGTTAGATTCTTTTGTCAGGAAAGATGTTGAAGTTGATCTTCTGGGGAATCTACTAACACATTTATGCAAGTCTGAGCCTTTCTTGCTAAATCAGGGACAACTTACTGAAGGGTTGGAGATTGTACTATTTTCATTGGAGGATGCTGTTGTTGATGCGCCCAAGGCTCCTGAGTTCCTTGGTAGGATTCTTGCAAAACTGGTTGTTGAGGGGATATTCTTTATTCAAGATATAGCCAGGGCAATCAAGGATGGAGGTACAGAGCCAGGAAGCTTATTAGAAAATGGTCATGCAATAGAAGTTCTTGGAACTGTTTTGGAAGATATTA

Fln Alignment:

sp_v1.1_unigene79431___GHAQPLPYAKSALADIPPFTSLSTRRTGAGPIAGCNSDRMPVGMRDEILTRTCAAEKPSFAKYCVQERNVLDNDRREFKNSCSSGDRGGKTANAEFQLQEHSSQRSLSSQLTEVQLRKKAEMAIEEYYSVRDLKEAASCVDDLKAPLFHSNMVSLWMLDSFVRKDVEVDLLGNLLTHLCKSEPFLLNQGQLTEGLEIVLFSLEDAVVDAPKAPEFLGRILAKLVVEGIFFIQDIARAIKDGGTEPGSLLENGHAIEVLGTVLEDI
D5AC81_______________GRNQPLPYGRSALADVPPFTSVSNRRTGVGLISGCNSDRMPLGMRDDILTRTHGAEKPLFAKSCVQERNVLDNDRREFKNSYSSGDKGGKTANAEFQLQEHSSQRIPSSQLTEVQLRKKAEMAIHEYYSVRDIKEAALCVDDLKAPLFHPTMVSLWITDSFDRKDVEVDLLGNLLTYLCKTEPFLLNEEQLVEGLGTVLFSLEDTTVDAPKAPEFLGRILAKLVVEGILFIQNIARAIKVGGTEPGSLLENGYGIEVLGTVLEII

SNPs (tot: 3)

Position	A %	C %	T %	Probability
488		20	80	0.995493
490		20	80	0.995493
491	20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain