SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79427

Length: 904 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene79427 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NRPB4; NRPB4; DNA-directed RNA polymerase; K03012 DNA-directed RNA polymerase II subunit D	-	-	75%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	73%
Blast2go	kda subunit of rna polymerase ii	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Pyrimidine metabolism	00240	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	85%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	85%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HRDC-like	IPR010997	-	0.0	85%

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
376		88	11		0.923564
378	11	11		77	0.968132
380			12	87	0.992554
381	87			12	0.992554
382		12	87		0.992554
383	12			87	0.992554
384	87	12			0.992554
437		71	28		1.0
441			28	71	1.0
449	28			71	1.0
450			28	71	1.0
451			28	71	1.0
454	28			71	1.0
563		25		75	0.996473
564		75		25	0.996473
568	75			25	0.996473
569		75	25		0.996473
570	25			75	0.996473
573		75	25		0.996473
579			25	75	0.996473
580		50	25	25	0.995547
581	25	75			0.996473
582	75		25		0.996473
583		25		75	0.996473
584			50	50	1.0
585	50			50	1.0
587	20			60	0.99255
590		25		75	0.996476
594			25	75	0.996476
595	75			25	0.996473
602			25	75	0.996473
603	25	75			0.996473
604		25		75	0.996473
711		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain