SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79411

Length: 683 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene79411 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ferredoxin-3, chloroplast precursor, putative; K02639 ferredoxin	-	-	2.0e-24	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	ferredoxin- chloroplast	-	-	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	2Fe-2S ferredoxin-type domain	IPR001041	-	76%
Blast2go	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	76%
Blast2go	Ferredoxin [2Fe-2S], plant	IPR010241	-	76%
Blast2go	Beta-grasp domain	IPR012675	-	76%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
304	10		90		0.90298
372			73	13	0.999956
373		13		86	0.999973
571	66			33	0.997452
575		66	33		0.997452
576	66			33	0.997452
581	33			66	0.997452
584	66	33			0.997452
587	25			75	0.996479
588	75		25		0.996479
589	75		25		0.996479
592	25			75	0.996479
595	25	75			0.996479
596	75	25			0.996479
644		66	33		0.997461
645		66	33		0.997461
648	33		66		0.997467
649		33	66		0.997467
651	33	66			0.997461
652	66	33			0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain