SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79278

Length: 482 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene79278
CGTCGTGACCTTGGCTGTCACTCAATTTTTCATTTCATTTCATTTGAGAGAGGCGTAGGGTTAGAAGTGATCGAGGTTTTCATTGCGGAGTAGCCACAGAAACCTGCTGGGCAAGCATTTGCAGGGCAAGTTTCTTCTGTAACAGCGGTGTTTCGAGATCGAATCTGAGTGCTAAAGCTGAGATTAGGGTTTCTGAAGAAATTTGAGCCATGTCGGACGCTCCGGAATATCGCTGCTTCGTTGGAGGCCTCTCGTGGAGCACATCTGACAGGACTTTGGAAGATGCTTTTCACAAGTTTGGTCATCTCATTGAGGCAAAGGTTGTCGTTGACAGGGATACTGGTCTTCGCAGTTTGTGTTTGTCCATTGAGACAAGAAGTCCATGGAAGATGCCATAGATTCCATGCATGGGATGAGTCTTGATGGCCGTTCTATAACCGTTGACAGAGCTCGGCCAAAGAGTGATGGGGAGATCGTGGTGA

Ace file of the UniGene sp_v1.1_unigene79278

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATRZ-1A; RNA binding / nucleotide binding	-	-	9.0e-20	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	rna recognition motif family expressed	-	-	4.18022e-34	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	cold acclimation	GO:0009631	Biological Process	4.18022e-34	87%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	4.18022e-34	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNN7

Fln msg: Separated hits, possible frame ERROR between 344 and 371, Distance to subject end: 122 aas, your sequence is shorter than subject: 91 - 215

Fln protein: MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTxxxxxxxxxxDKKSMEDAIDSMHGMSLDGRSITVDRARPKSDGEIVV

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCATTTCATTTCATTTGAGAGAGGCGTAGGGTTAGAAGTGATCGAGGTTTTCATTGCGGAGTAGCCACAGAAACCTGCTGGGCAAGCATTTGCAGGGCAAGTTTCTTCTGTAACAGCGGTGTTTCGAGATCGAATCTGAGTGCTAAAGCTGAGATTAGGGTTTCTGAAGAAATTTGAGCC_-_ATGTCGGACGCTCCGGAATATCGCTGCTTCGTTGGAGGCCTCTCGTGGAGCACATCTGACAGGACTTTGGAAGATGCTTTTCACAAGTTTGGTCATCTCATTGAGGCAAAGGTTGTCGTTGACAGGGATACTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxAGACAAGAAGTCCATGGAAGATGCCATAGATTCCATGCATGGGATGAGTCTTGATGGCCGTTCTATAACCGTTGACAGAGCTCGGCCAAAGAGTGATGGGGAGATCGTGGTGA

Fln Alignment:

sp_v1.1_unigene79278___MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGxxxxxxxxxDKKSMEDAIDSMHGMSLDGRSITVDRARPKSDGE
A9NNN7_______________MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGxxxxxxxxxDKKSMEDAIDSMHGMSLDGRSITVDRARPKSDGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain