SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79239

Length: 319 nt

UniGene Fasta

>sp_v1.1_unigene79239
CGTCGTGACCTTGGCTGTCACTCATATTCAAATGGACATTTTTCATCCAGGGTCCCTCAGAAACACCTTATCAAGAGGGTGTATTTCAGCTAGCCATGACCGTGCCAGAGCAATATCCACTTGTTCCACCTCAAGTGCGCTTTGTGACTAAAATATTTCATCCAAATGTCCATTTCAAGGTGTCTTTGCTTCCATTAATTATTCTAAATAAAATCCAGCTAATTCTTAGGTCTCGGATATCAATTCCTTTTTTTAGTACACTACAATGAAAGTGAGATCTATTAAATTTAATACTAGTGTTTCTGTTAGGCCTTACATT

Ace file of the UniGene sp_v1.1_unigene79239

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=A9NTD0_PICSI	-	-	3.0e-22	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	ubiquitin-conjugating enzyme e2 16	-	-	6.0342e-22	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein import into peroxisome matrix	GO:0016558	Biological Process	6.0342e-22	81%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	6.0342e-22	81%
Blast2go	protein binding	GO:0005515	Molecular Function	6.0342e-22	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	6.0342e-22	81%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	6.0342e-22	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTD0

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 27 aas, your sequence is shorter than subject: 89 - 160

Fln protein: S*PWLSLIFKWTFFIQGPSETPYQEGVFQLAMTVPEQYPLVPPQVRFVTKIFHPNVHFKVSLLPLIILNKIQLILRSRISIPFFSTLQ*

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTCAAATGGACATTTTTCATCCAGGGTCCCTCAGAAACACCTTATCAAGAGGGTGTATTTCAGCTAGCCATGACCGTGCCAGAGCAATATCCACTTGTTCCACCTCAAGTGCGCTTTGTGACTAAAATATTTCATCCAAATGTCCATTTCAAGGTGTCTTTGCTTCCATTAATTATTCTAAATAAAATCCAGCTAATTCTTAGGTCTCGGATATCAATTCCTTTTTTTAGTACACTACAATGAAAGTGAGATCTATTAAATTTAATACTAGTGTTTCTGTTAGGCCTTACATT

Fln Alignment:

sp_v1.1_unigene79239___IFKWTFFIQGPSETPYQEGVFQLAMTVPEQYPLVPPQVRFVTKIFHPNVHFKVSLLPLIIL
A9NTD0_______________IFKWTALIKGPSETPYQEGVFLLAMTVPEQYPLVPPQVRFVTKIFHPNVHFKTGEICLDIL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain