SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79168

Length: 380 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene79168
CGTCGTGACCTTGGCTGTCACTCATTCACGATTGTCGTTGTGAATAGTGAAATAGGGTCTCTGCCGTTATTGGGGACTGCGCCAACGCCATGCCTCCATTGTCATCGAAGGCCATGCCTCTCGGATCCCCAGCCCCTGATTTTGAGCTTCCAGAACCTCTCACTGGCAAGGTTTGGAAATTGGCTGACTTTGAAGGACATCCCGCACTGCTGGTGACGTTCATCTGCAATCACTGCCCATTTGTTGTGCATTTGAAGAAGGACATTGTCAAGCTTGCACGGGCTTATGGAGCTGTTTGCACTCCTGAATTTTACCTGTTCAAGAAGAATGGAAATCAGCCATTTGAGCTTGCTTATCATGGACAATTCGACGATTCCCGA

Ace file of the UniGene sp_v1.1_unigene79168

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thiol-disulfide isomerase and thioredoxins n=1 Tax=Zea mays RepID=B6U038_MAIZE	-	-	1.0e-29	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	antioxidant oxidoreductase	-	-	7.28675e-44	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	7.28675e-44	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thioredoxin fold	IPR012335	-	7.28675e-44	55%
Blast2go	Thioredoxin-like fold	IPR012336	-	7.28675e-44	55%
Blast2go	Redoxin	IPR013740	-	7.28675e-44	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSW0

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 97 - 193

Fln protein: MPPLSSKAMPLGSPAPDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKLARAYGAVCTPEFYLFKKNGNQPFELAYHGQFDDSR

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCACGATTGTCGTTGTGAATAGTGAAATAGGGTCTCTGCCGTTATTGGGGACTGCGCCAACGCC_-_ATGCCTCCATTGTCATCGAAGGCCATGCCTCTCGGATCCCCAGCCCCTGATTTTGAGCTTCCAGAACCTCTCACTGGCAAGGTTTGGAAATTGGCTGACTTTGAAGGACATCCCGCACTGCTGGTGACGTTCATCTGCAATCACTGCCCATTTGTTGTGCATTTGAAGAAGGACATTGTCAAGCTTGCACGGGCTTATGGAGCTGTTTGCACTCCTGAATTTTACCTGTTCAAGAAGAATGGAAATCAGCCATTTGAGCTTGCTTATCATGGACAATTCGACGATTCCCGA

Fln Alignment:

sp_v1.1_unigene79168___MPPLSSKAMPLGSPAPDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKL---------------------------------------------------ARAYGAVCTPEFYLFKKNGNQPFELAYHGQFDDSR
A9NSW0_______________MPPLESKTMPLGSTAPDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKLATDYIPRGLAIAAISSNSTVTFPEDGPDFMAEDARKFEYPFPYLYDETQEVARAYGAVCTPEFYLFKKNGNQPFELAYHGQFDDSR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
70	33		33	33	0.99775
75			66	33	0.997459
76		33	66		0.997464
77		33	66		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain