SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79161

Length: 349 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene79161
TGTGCTACTTTAGAGCAAATTGCAGTCACTACTATAGAAGTATGCCAAACATAATCAGAGTAAACCACCCTGGATTATCCTTTTGTGGTTGGACTTGGAACACTCATATTATCGATTTTCATTGCATTAACTTGTGGTATGTACGTCTCACCCAGGCAAAAACGCAGGACTTGGTAGAGACTACACTATTTTTTCCTTAATTGATGGTCTTGTGAAGTTTGAGAAATATGGACCAGACAAGAAGAAGGTGAGTGTTTATCCGTACATACCACAGCCTGAGAATCCAAACAGTTATAGGGCAAGGCGGCGTGAGTTTCACCGCCTCCGGCGTGAGAGGCGCAAAGCCAGG

Ace file of the UniGene sp_v1.1_unigene79161 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L27, chloroplastic n=3 Tax=Oryza sativa RepID=RK27_ORYSJ	-	-	1.0e-17	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	50s ribosomal protein l27	-	-	8.68493e-21	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	8.68493e-21	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPZ6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 26 aas, your sequence is shorter than subject: 116 - 194

Fln protein: VLL*SKLQSLL*KYAKHNQSKPPWIILLWLDLEHSYYRFSLH*LVVCTSHPGKNAGLGRDYTIFSLIDGLVKFEKYGPDKKKVSVYPYIPQPENPNSYRARRREFHRLRRERRKAR

Protein Length: 117

Fln nts: TGTGCTACTTTAGAGCAAATTGCAGTCACTACTATAGAAGTATGCCAAACATAATCAGAGTAAACCACCCTGGATTATCCTTTTGTGGTTGGACTTGGAACACTCATATTATCGATTTTCATTGCATTAACTTGTGGTATGTACGTCTCACCCAGGCAAAAACGCAGGACTTGGTAGAGACTACACTATTTTTTCCTTAATTGATGGTCTTGTGAAGTTTGAGAAATATGGACCAGACAAGAAGAAGGTGAGTGTTTATCCGTACATACCACAGCCTGAGAATCCAAACAGTTATAGGGCAAGGCGGCGTGAGTTTCACCGCCTCCGGCGTGAGAGGCGCAAAGCCAGG

Fln Alignment:

sp_v1.1_unigene79161___HPGKNAGLGRDYTIFSLIDGLVKFEKYGPDKKKVSVYPYIPQPENPNSY
B8LPZ6_______________HAGKNVGLGRDYTIFSLIDGLVKFEKYGPDKKKVSVYPYVPQPENPNSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain