SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79153

Length: 298 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene79153
CGTCGTGACCTTGGCTGTCACTCATGCTTTTCAAATACAGGTGGGACTGACAACAAGTGACTGGGATGAATGCAGTTTCTGGCTTGCTGCCCTTAAGCGAATGATCGTCGTGACCTTGGCTGTCATTAAATTTCTGATGGTTCTACAGTTAGATTTTTTCCAAGTGCCATTTTTACATAAGATGTGATTAGTTATTCTGTTCATTATTCTGTTTTTCATTCAATTTGACATTGGAGTTTCAAGGCATTCCAAGGATAGCATGTACACAAGTTGATTTTTTGCTTGAGAGTTATTGCAA

Ace file of the UniGene sp_v1.1_unigene79153

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9TPN4

Fln msg: your sequence is shorter than subject: 62 - 1101

Fln protein: VVTLAVTHAFQIQVGLTTSDWDECSFWLAALKRMIVVTLAVIKFLMVLQLDFFQVPFLHKM*

Protein Length: 63

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCTTTTCAAATACAGGTGGGACTGACAACAAGTGACTGGGATGAATGCAGTTTCTGGCTTGCTGCCCTTAAGCGAATGATCGTCGTGACCTTGGCTGTCATTAAATTTCTGATGGTTCTACAGTTAGATTTTTTCCAAGTGCCATTTTTACATAAGATGTGA___TTAGTTATTCTGTTCATTATTCTGTTTTTCATTCAATTTGACATTGGAGTTTCAAGGCATTCCAAGGATAGCATGTACACAAGTTGATTTTTTGCTTGAGAGTTATTGCAA

Fln Alignment:

sp_v1.1_unigene79153___THAFQIQVGLTTSDWDECSFWLAALKRMI
A9TPN4_______________TAAMQIQVALTTSDWDECGFWLTALKRMI

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
107	33		66		0.997476
108	33			66	0.997476
109	33	66			0.997476
112	33		66		0.997467
114	33	66			0.997467
117	33			66	0.997467
119	33		66		0.997471
120	33	66			0.997471
122	33		66		0.997467
124		66	33		0.997467
126		33	33		0.997753
127	33	33		33	0.997753
130	66	33			0.997476
218		33		66	0.997464
219		66		33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain