SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79129

Length: 458 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene79129
GTACCCGGTCCAGCACATCGCCATGGTATGGGCCGGACCGGGTACTCTACTTGGGGCCTTTTTCCGGAGAGCCACCATCCTACTTGACTGGTGAGTTCCCCGGTGACTACGGGTGGGACACCGCGGGGCTTTCGGCAGATCCAGAGACTTTTGCGAAGAACAGAGAGCTGGAAGTAATCCACTGCCGGTGGGCAATGCTGGGCGCTCTGGGTTGCGTTTTCCCGGAGCTTCTGGCGAGAAATGGAGTAAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGATCTCAGATTTTCAGCGAGGGAGGGCTTGACTACCTGGGAAACCCTAGCTTGGTTCACGCGCAGAGCATTCTTGCTGACGACCCTGACGCTTTCGCGGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGTTGGCCATGTTTTCCATGTTCGGATTCTTCGTGCAGGCCATTGTCACT

Ace file of the UniGene sp_v1.1_unigene79129

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chlorophyll a-b binding protein 2 n=1 Tax=Zea mays RepID=B6SZ08_MAIZE	-	-	85%
FL-Next	tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	77%
Blast2go	chlorophyll a b binding	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Chlorophyll A-B binding protein, plant	IPR001344	-	77%
Blast2go	Chlorophyll A-B binding protein	IPR022796	-	77%
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q41234

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 152 - 274

Fln protein: TRSSTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVT

Protein Length: 153

Fln nts: GTACCCGGTCCAGCACATCGCCATGGTATGGGCCGGACCGGGTACTCTACTTGGGGCCTTTTTCCGGAGAGCCACCATCCTACTTGACTGGTGAGTTCCCCGGTGACTACGGGTGGGACACCGCGGGGCTTTCGGCAGATCCAGAGACTTTTGCGAAGAACAGAGAGCTGGAAGTAATCCACTGCCGGTGGGCAATGCTGGGCGCTCTGGGTTGCGTTTTCCCGGAGCTTCTGGCGAGAAATGGAGTAAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGATCTCAGATTTTCAGCGAGGGAGGGCTTGACTACCTGGGAAACCCTAGCTTGGTTCACGCGCAGAGCATTCTTGCTGACGACCCTGACGCTTTCGCGGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGTTGGCCATGTTTTCCATGTTCGGATTCTTCGTGCAGGCCATTGTCACT

Fln Alignment:

sp_v1.1_unigene79129___SSTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI-----------------------------------------LADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVT
Q41234_______________ASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain