SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79080

Length: 421 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene79080
CGTCGTGACCTTGGCTGTCACTCAATTAGTGGAATTCGACATTATATCTGATTCTGTAAGGACGAGAGGTAGCCATTCCCGTAACTTGCTAAGAGTTAAACGAGGGCTGGACATGGTCAAAGTGTTATTTGAACAACTTCTTGCCACAGAGGGGGACTCTTTGAGAGATCCTGCTTCACTGGCATATCAGCAAGTTTTTGCTCCACACCATGGGTGGGCTATTAGAAAGGCTGTTGGCGCTGGAATGTATTCCCTTCCAACAAAATCACAGTTTTTAAAGAAGCTAAATGAAGATGGCGAGTCTCCATTTCACAGAACATAGAATTGTATCAAAATTTCATTGCATGCCTGTTCGGAGTTCTAAAAATTGAAATAATCATCTAATCAATATAGAATGCATTTATAGGATAGTTGTGTAGAA

Ace file of the UniGene sp_v1.1_unigene79080

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ACD11; ACD11 (ACCELERATED CELL DEATH 11); sphingosine transmembrane transporter	-	-	1.0e-28	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	protein	-	-	3.64205e-35	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	3.64205e-35	82%
Blast2go	cell death	GO:0008219	Biological Process	3.64205e-35	82%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	3.64205e-35	82%
Blast2go	sphingosine transmembrane transporter activity	GO:0010175	Molecular Function	3.64205e-35	82%
Blast2go	protein binding	GO:0005515	Molecular Function	3.64205e-35	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycolipid transfer protein domain	IPR014830	-	3.64205e-35	82%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACB1

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 25 aas, your sequence is shorter than subject: 107 - 203

Fln protein: VVTLAVTQLVEFDIISDSVRTRGSHSRNLLRVKRGLDMVKVLFEQLLATEGDSLRDPASLAYQQVFAPHHGWAIRKAVGAGMYSLPTKSQFLKKLNEDGESPFHRT*

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAGTGGAATTCGACATTATATCTGATTCTGTAAGGACGAGAGGTAGCCATTCCCGTAACTTGCTAAGAGTTAAACGAGGGCTGGACATGGTCAAAGTGTTATTTGAACAACTTCTTGCCACAGAGGGGGACTCTTTGAGAGATCCTGCTTCACTGGCATATCAGCAAGTTTTTGCTCCACACCATGGGTGGGCTATTAGAAAGGCTGTTGGCGCTGGAATGTATTCCCTTCCAACAAAATCACAGTTTTTAAAGAAGCTAAATGAAGATGGCGAGTCTCCATTTCACAGAACATAG___AATTGTATCAAAATTTCATTGCATGCCTGTTCGGAGTTCTAAAAATTGAAATAATCATCTAATCAATATAGAATGCATTTATAGGATAGTTGTGTAGAA

Fln Alignment:

sp_v1.1_unigene79080___LVEFDIISDSVRTRGSHSRNLLRVKRGLDMVKVLFEQLLATEGDSLRDPASLAYQQVFAPHHGWAIRKAVGAGMYSLPTKSQFLKKLNEDGES
D5ACB1_______________LVDSDIKSGSVRG-GSYSNNLLLVKRGLDMVKVLFERLLVTRGSSLRDPASVAYAQVLAPHHGWAIRKVVAAGMYTLPTKSQLLKKLNEDEAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain