SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79072

Length: 507 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene79072
AGATTTCCGTATGAAGTGATGGTTTGGTTTTGGTGTAGTTCTTGTCTGGTGGGCAATCTGAGGTGGAGGCGACCTTGAACTTGAACGCGATGAACCAGGCGCCGAACCCGTGGCACGTATCATTCTCATATGCTCGTGCTCTGCAAAGGCCAACTCCCTTGCACAGCTTGGCAAATACTCTGCTGAAGGCGAGTCTGCGGAGTCGAAGGAGGGAATGTTCGTGAAGGGCTACACTTATTAAGCATACTAGTCCAGTGCAGTGGAGTCTAGTATAGTATGGTTGAAAAGCATAGCCACTAGTCCAGTGCGGTGGAGTCTAGTATAGTATGGTTGAAAAACATAGTTTTGCTCTATTTGAGCTTTGCTATATAGTTAGGCGTTTCATGCTGTTTTTGTAAGGTCACTATAATATGAACTTGTGTATTACATAATTGAGACAAGGGGAGGTCGTGGTCGATAGCTACCAGAATTGTATTTTAACTCCAAAATCGAAACACAAGTTCAGCC

Ace file of the UniGene sp_v1.1_unigene79072

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI	-	-	1.0e-15	100%
FL-Next	sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	fructose bisphosphate aldolase	-	-	2.52358e-15	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	glucose catabolic process	GO:0006007	Biological Process	2.52358e-15	99%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	2.52358e-15	99%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	2.52358e-15	99%
Blast2go	catalytic activity	GO:0003824	Molecular Function	2.52358e-15	99%
Blast2go	thylakoid lumen	GO:0031977	Cellular Component	2.52358e-15	99%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.52358e-15	99%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	2.52358e-15	99%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	2.52358e-15	99%
Blast2go	plastoglobule	GO:0010287	Cellular Component	2.52358e-15	99%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	2.52358e-15	99%
Blast2go	apoplast	GO:0048046	Cellular Component	2.52358e-15	99%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Fructose-bisphosphate aldolase, class-I	IPR000741	-	2.52358e-15	99%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUC9

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 80 - 398

Fln protein: ISV*SDGLVLV*FLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARAxxxANSLAQLGKYSAEGESAESKEGMFVKGYTY*

Protein Length: 81

Fln nts: AGATTTCCGTATGAAGTGATGGTTTGGTTTTGGTGTAGTTCTTGTCTGGTGGGCAATCTGAGGTGGAGGCGACCTTGAACTTGAACGCGATGAACCAGGCGCCGAACCCGTGGCACGTATCATTCTCATATGCTCGTGCTxxxxxxxxxGCCAACTCCCTTGCACAGCTTGGCAAATACTCTGCTGAAGGCGAGTCTGCGGAGTCGAAGGAGGGAATGTTCGTGAAGGGCTACACTTATTAAGCATACTAGTCCAGTGCAGTGGAGTCTAGTATAGTATGGTTGAAAAGCATAGCCACTAGTCCAGTGCGGTGGAGTCTAGTATAGTATGGTTGAAAAACATAGTTTTGCTCTATTTGAGCTTTGCTATATAGTTAGGCGTTTCATGCTGTTTTTGTAAGGTCACTATAATATGAACTTGTGTATTACATAATTGAGACAAGGGGAGGTCGTGGTCGATAGCTACCAGAATTGTATTTTAACTCCAAAATCGAAACACAAGTTCAGCC

Fln Alignment:

sp_v1.1_unigene79072___FLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQxxxxxxxxxxxxxxxxxxxxxxxxAKANSLAQLXXXXXXXXXXXXXXXMFVKGYT
A9NUC9_______________FLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQxxxxxxxxxxxxxxxxxxxxxxxxAKANSLAQLGKYSAEGESAESKEGMFVKGYT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain