SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene79019

Length: 472 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene79019
CGTCGTGACCTTGGCTGTCACTCAGGGGTGGCATTCATGGATAACCACTATCCTGTGCGCAGTGCTTTTTCTGTTATCAACAAGGTGCTGGATGAATACCAACAGAACTTTGGTGATTCCTGGAGGACTGTTCAGTCGCGTCGTGACCTTGGCTGTCACTCATTAAACGATGCTTTGACTAAATTTCAGGATCCAGCAGAGGCGGATAAACTCCTGAAGATCCAGAGAGACTTGGATGAAACCAAAATCATTCTCCATAAGACTATTGACAGTGTGCTTGCAAGAGGGGAAAGACTGGACTCTCTAGTGGAGAAGAGCTCTGATCTGAGCATGGCCTCCCAGCTGTTCTACAAGCAAGCCAAGAAAACAAACCAATGCTGTACAATATTGTAATATATGGTATCTGAGCTTCTGTTGTAATTTCCTGATATGCATCAAGGTCTGAGCAGAGCCGGTTCCTGTTAAGTTGGTC

Ace file of the UniGene sp_v1.1_unigene79019

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	VAMP-like protein YKT62; K08516 synaptobrevin homolog YKT6	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	vamp-like protein ykt62	-	-	88%

Source	InterPros	Term	Type	Identity
Blast2go	Synaptobrevin	IPR001388	-	88%
Blast2go	Longin	IPR010908	-	88%
Blast2go	Longin-like	IPR011012	-	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ69

Fln msg: your sequence is shorter than subject: 131 - 202

Fln protein: RRDLGCHSGVAFMDNHYPVRSAFSVINKVLDEYQQNFGDSWRTVQSRRDLGCHSLNDALTKFQDPAEADKLLKIQRDLDETKIILHKTIDSVLARGERLDSLVEKSSDLSMASQLFYKQAKKTNQCCTIL*

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGTGGCATTCATGGATAACCACTATCCTGTGCGCAGTGCTTTTTCTGTTATCAACAAGGTGCTGGATGAATACCAACAGAACTTTGGTGATTCCTGGAGGACTGTTCAGTCGCGTCGTGACCTTGGCTGTCACTCATTAAACGATGCTTTGACTAAATTTCAGGATCCAGCAGAGGCGGATAAACTCCTGAAGATCCAGAGAGACTTGGATGAAACCAAAATCATTCTCCATAAGACTATTGACAGTGTGCTTGCAAGAGGGGAAAGACTGGACTCTCTAGTGGAGAAGAGCTCTGATCTGAGCATGGCCTCCCAGCTGTTCTACAAGCAAGCCAAGAAAACAAACCAATGCTGTACAATATTGTAA___TATATGGTATCTGAGCTTCTGTTGTAATTTCCTGATATGCATCAAGGTCTGAGCAGAGCCGGTTCCTGTTAAGTTGGTC

Fln Alignment:

sp_v1.1_unigene79019___GVAFMDNHYPVRSAFSVINKVLDEYQQNFGDSWRTVQSRRDLGCHSLNDALTKFQDPAEADKLLKIQRDLDETKIILHKTIDSVLARGERLDSLVEKSSDLSMASQLFYKQAKKTNQCCTIL
A9NQ69_______________GVAFMDNHYPVRSAFSVINKVLDEYQKNFGDSWRTIQLDANQSWPYLNDALTKFQDPAEADKLLKIQRDLDETKIILHKTIDSVLARGERLDSLVEKSSDLSMASQLFYKQAKKTNQCCTIL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
139		66	33		0.997471
140	33		66		0.997471
142		66	33		0.997471
143		33	66		0.997471
149	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain