SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78899

Length: 502 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene78899
TCCCTTTCCCTTTCCAACCTTTTTGGGTAGTAAAACGTCGTGACCATGGTGGCAATAGCATCGGGTTAGTTTTGGAGCTGCTGCCTGTTCGTATTACAGAATTATTCATTTGACGGGTCGAGGTAGTGGTTCGTTCTTGTGAATCAAGAGTAAAGAGGGGAGTCGGCATCATGAGTTCTGCAGGAGGTGGCGGCGGCCGAGGGAAAGCGAAGTCTTCAAAGTCTGTTTCGAGGTCTCATAAGGCTGGCCTGCAATTTCCGGTTGGAAGGATTGCTCGTTTCCTAAAGTCGGGCAAGTATGCAGAGCGCGTTGGGGCAGGGGCTCCGGTTTATATGGCTGCGGTTTTAGAGTATCTAGCAGCAGAGGTGCTTGAGTTGGCCGGAAATGCAGCAAGGGATAACAAGAAGAACAGGATTGTACCTCGACACATTCAGCTAGCTGTCAGAAACGACGAGGAGCTCAGCAAATTGCTAGGTGCTGTAACAATTGCCAATGGTGGTGT

Ace file of the UniGene sp_v1.1_unigene78899 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2AX n=9 Tax=Spermatophyta RepID=H2AX_PICAB	-	-	3.0e-27	78%
FL-Next	sp=Histone H2A; Pinus pinaster (Maritime pine).	-	-	0.0	97%
Blast2go	histone	-	-	2.46361e-28	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	2.46361e-28	98%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone H2A	IPR002119	-	2.46361e-28	98%
Blast2go	Histone core	IPR007125	-	2.46361e-28	98%
Blast2go	Histone-fold	IPR009072	-	2.46361e-28	98%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q711T3

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 110 - 138

Fln protein: MSSAGGGGGRGKAKSSKSVSRSHKAGLQFPVGRIARFLKSGKYAERVGAGAPVYMAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGG

Protein Length: 111

Fln nts: TCCCTTTCCCTTTCCAACCTTTTTGGGTAGTAAAACGTCGTGACCATGGTGGCAATAGCATCGGGTTAGTTTTGGAGCTGCTGCCTGTTCGTATTACAGAATTATTCATTTGACGGGTCGAGGTAGTGGTTCGTTCTTGTGAATCAAGAGTAAAGAGGGGAGTCGGCATC_-_ATGAGTTCTGCAGGAGGTGGCGGCGGCCGAGGGAAAGCGAAGTCTTCAAAGTCTGTTTCGAGGTCTCATAAGGCTGGCCTGCAATTTCCGGTTGGAAGGATTGCTCGTTTCCTAAAGTCGGGCAAGTATGCAGAGCGCGTTGGGGCAGGGGCTCCGGTTTATATGGCTGCGGTTTTAGAGTATCTAGCAGCAGAGGTGCTTGAGTTGGCCGGAAATGCAGCAAGGGATAACAAGAAGAACAGGATTGTACCTCGACACATTCAGCTAGCTGTCAGAAACGACGAGGAGCTCAGCAAATTGCTAGGTGCTGTAACAATTGCCAATGGTGGTGT

Fln Alignment:

sp_v1.1_unigene78899___LQFPVGRIARFLKSGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGG
Q711T3_______________LQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGG

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
391		20		80	0.999996
451			50	50	1.0
454	50	50			1.0
456	50	30	20		1.0
459	22	77			0.999999
461	50			50	1.0
462	28		71		1.0
463			71	28	1.0
469	71		28		1.0
470		71	28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain