SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78878

Length: 913 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene78878

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class II chitinase 2-3 n=1 Tax=Pseudotsuga menziesii RepID=D7P706_PSEMZ	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	class iv chitinase	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	0.0	83%
Blast2go	Lysozyme-like domain	IPR023346	-	0.0	83%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
470		33	66		0.998869
477	66		33		0.997476
482		33	66		0.997459
483		33	66		0.997459
624		66	33		0.997452
654	75			25	0.996474
657		33		66	0.997452
663	25		75		0.996475
681		66		33	0.997452
687	33	66			0.997452
732		66		33	0.997452
737	66		33		0.997452
738		66		33	0.997452
746	33	66			0.997452
755	66		33		0.997452
756		33		66	0.997452
763	33		66		0.997452
764	33		66		0.997452
783	33	66			0.997452
823	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain