SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78832

Length: 345 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene78832
CGTCGTGACCTTGGCTGTCACTCAATTATTGTGCAATATATCTGGTCATGTGGCCAGGGAGTGCCCCAAGGCTCGGATTTTGGCTGTTACTGTGGAAGATTTATTGACGATAGGCGTGGAAGATTTAATGACATAATTTGTAGGACATGCAACGAGCCAGGGCATACCAGTAGGGAGTGTACTGGAATTCTCATCTGCCACAACTGTGGTGGCCGTGGACATGTTGCATACGAGTGCCCCTTTGGTCGTGTGATGCTGCGGGACATGCGCAGGCATTGATGCCGCAGTTTCTGCCCCAACTTGACTTTTTAGATTATCTGATTTTGGCAAATCTATTATGAATTT

Ace file of the UniGene sp_v1.1_unigene78832

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative zinc finger protein n=1 Tax=Hyacinthus orientalis RepID=Q6EIC6_HYAOR	-	-	8.0e-20	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	cellular nucleic acid binding	-	-	3.27722e-34	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	3.27722e-34	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU66

Fln msg: warning!, putative chimeric sequence! or repetitive structure your sequence is shorter than subject: 93 - 248

Fln protein: VVTLAVTQLLCNISGHVARECPKARxxxxxxGRFIDDRRGRFNDIICRTCNEPGHTSRECTGILICHNCGGRGHVAYECPFGRVMLRDMRRH*

Protein Length: 94

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTGTGCAATATATCTGGTCATGTGGCCAGGGAGTGCCCCAAGGCTCGGATxxxxxxxxxxxxxxxTGGAAGATTTATTGACGATAGGCGTGGAAGATTTAATGACATAATTTGTAGGACATGCAACGAGCCAGGGCATACCAGTAGGGAGTGTACTGGAATTCTCATCTGCCACAACTGTGGTGGCCGTGGACATGTTGCATACGAGTGCCCCTTTGGTCGTGTGATGCTGCGGGACATGCGCAGGCATTGATGCCGCAGTTTCTGCCCCAACTTGACTTTTTAGATTATCTGATTTTGGCAAATCTATTATGAATTT

Fln Alignment:

sp_v1.1_unigene78832___CNISGHVARECPKARIxxxxxGRFIDDRRGRFNDIICRTCNEPGHTSRECTGILICHNCGGRGHVAYECPFGRVMLRDMRR
A9NU66_______________CKRPGHFARDCPNVSVxxxxxGRFMDERRGRFNDIICRTCNEPGHTSRECTPILICHNCGGRGHVAYECPSGRVMLRDMRR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain