SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78822

Length: 414 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene78822
CTCATCCTACATATCTCCAGATGATCACGGAAGCGATCACTTCTTTGAAGGAGAGGACCGGGTCAAGCCAGTATGCCATCGCAGGTTATATCGGGAAGAAGTATCAGTCTCAACTGCCTGCGAATTTCAAGAAGGTGCTAGCAGTTCAGCTGAGAAATCTTGCCAAATCTGGCAAGCTCACAAAGGTCAAGAATTCCTTCAAGCTTTCTGAGGAGCTGAAGAAGCCCGCAGCGAAGCCCAAGGTAGCGGCTAAGAAGGCTCCCAAGTCCGCTAAACCTGCCGCCAAAATAGCCAAGGCTCCAAAGGTCGCTAAGCCGAAGCCTGCAGCGGCTCCCAAGAAGGTGGAGAAGGCGGCAGCACCGGCTAAGAAGCCAGCGTTTTCCTTGCTAAAAAGGCTGCCCCGCCTGCGAAGAA

Ace file of the UniGene sp_v1.1_unigene78822

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTA3_PHYPA	-	-	4.0e-22	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	histone-like protein	-	-	1.10789e-28	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone H1/H5	IPR005818	-	1.10789e-28	85%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	1.10789e-28	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAB3

Fln msg: Distance to subject end: 55 aas, your sequence is shorter than subject: 137 - 224

Fln protein: HPTYLQMITEAITSLKERTGSSQYAIAGYIGKKYQSQLPANFKKVLAVQLRNLAKSGKLTKVKNSFKLSEELKKPAAKPKVAAKKAPKSAKPAAKIAKAPKVAKPKPAAAPKKVEKAAAPAKKPAFSLLKRLPRLRR

Protein Length: 138

Fln nts: CTCATCCTACATATCTCCAGATGATCACGGAAGCGATCACTTCTTTGAAGGAGAGGACCGGGTCAAGCCAGTATGCCATCGCAGGTTATATCGGGAAGAAGTATCAGTCTCAACTGCCTGCGAATTTCAAGAAGGTGCTAGCAGTTCAGCTGAGAAATCTTGCCAAATCTGGCAAGCTCACAAAGGTCAAGAATTCCTTCAAGCTTTCTGAGGAGCTGAAGAAGCCCGCAGCGAAGCCCAAGGTAGCGGCTAAGAAGGCTCCCAAGTCCGCTAAACCTGCCGCCAAAATAGCCAAGGCTCCAAAGGTCGCTAAGCCGAAGCCTGCAGCGGCTCCCAAGAAGGTGGAGAAGGCGGCAGCACCGGCTAAGAAGCCAGCGTTTTCCTTGCTAAAAAGGCTGCCCCGCCTGCGAAGAA

Fln Alignment:

sp_v1.1_unigene78822___HPTYLQMITEAITSLKERTGSSQYAIAGYIGKKYQSQLPANFKKVLAVQLRNLAKSGKLTKVKNSFKLSEEL
D5AAB3_______________HPTYLQMITEAITSLKERTGSSQYAIAAYIGSKYQSKLPANFKKLLTVQLRNLAKSGKLTKVKSSFKLSEQL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain