SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78789

Length: 329 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene78789
ATTGTACAATACCCTGTTCGAAAACAAGAAGAACAGGAAATATGGAATGTTGGGCCGCTACCTCGAACCTATGCAAATGTTCCCGCGTTTCCTGTTGCCAATTTTCTCAGTGCTTGCTATCTCTGCAAACAGCAATTGAGCCATGGGAAGGACATCTACATGTACAGAGGTGACAAAGCATTCTGCAGCGTGGAATGCCGTTACCAACAGATCTTGATGGATGAACACACGGAAACATTTCCCTCTTCTTCACCATCATGGTCAAGTACAGCTGCAAAATTTTCTTAACCACTATGGACCCTACGGTAATAAGAGAGGCACGAGAGCTG

Ace file of the UniGene sp_v1.1_unigene78789 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF581 domain containing protein	-	-	2.0e-25	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	conserved hypothetical protein [Ricinus communis]	-	-	4.57929e-14	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF581	IPR007650	-	4.57929e-14	78%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXA1

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning, your sequence is shorter than subject: 96 - 124

Fln protein: IVQYPVRKQEEQEIWNVGPLPRTYANVPAFPVANFLSACYLCKQQLSHGKDIYMYRGDKAFCSVECRYQQILMDEHTETFPSSSPSWSSTAAKFS*

Protein Length: 97

Fln nts: ATTGTACAATACCCTGTTCGAAAACAAGAAGAACAGGAAATATGGAATGTTGGGCCGCTACCTCGAACCTATGCAAATGTTCCCGCGTTTCCTGTTGCCAATTTTCTCAGTGCTTGCTATCTCTGCAAACAGCAATTGAGCCATGGGAAGGACATCTACATGTACAGAGGTGACAAAGCATTCTGCAGCGTGGAATGCCGTTACCAACAGATCTTGATGGATGAACACACGGAAACATTTCCCTCTTCTTCACCATCATGGTCAAGTACAGCTGCAAAATTTTCTTAA___CCACTATGGACCCTACGGTAATAAGAGAGGCACGAGAGCTG

Fln Alignment:

sp_v1.1_unigene78789___VGPLPRTYANVPA---FPVANFLSACYLCKQQLSHGKDIYMYRGDKAFCSVECRYQQILMDEHTE
A9NXA1_______________LSPPSVVYSNVVASTPLPPIDFLDACYLCKKSLGPGRDIYMYRGDKAFCSVECRLKQMDMDEHNE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain