SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78714

Length: 454 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene78714
GGACATTTGGAACTCAAACTATAAAATAGGCTATTTGCCCTCTCTAATCAGGTGTATTTCAGGGCTGGGGATGTCAGAATAGAAAATAGATCCTTTGCCCATAATTCCAAAATCCAGACTCTATTTCAAGACTTGAGCCTCTATTTCGAAGTCTTCCGTTTCTTCCGGAAGAAATCCGAGCAAACAACAGTGTTCCGAGATTGTGGGAGGGCGGTTATTCGCATTCAAAAGAAGTCCCGCTTGCTTCTTCGGGGTTACAAGATGGATCAAGAAAATCGGAATTTAGGTGCCGACAGCATCGGGTGCCAGCAATCCCCGGAAGGGCACACCCTCTGCAGCAACAACTGCGGCTTTTTCGGGAGCTCTTCAACAAGAAATCTGTGTTCCAAATGTTATAGGGATCTCATGATGAAGGAGGCACAAGCTTCCTCTGCAACGGCCGCCGTTGAACAGG

Ace file of the UniGene sp_v1.1_unigene78714 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zn-finger containing protein (Fragment) n=4 Tax=Pseudotsuga RepID=C6FAG3_PSEMZ	-	-	6.0e-24	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	zn-finger containing protein	-	-	1.08239e-23	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, A20-type	IPR002653	-	1.08239e-23	79%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKD1

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 64 - 181

Fln protein: MDQENRNLGADSIGCQQSPEGHTLCSNNCGFFGSSSTRNLCSKCYRDLMMKEAQASSATAAVEQ

Protein Length: 65

Fln nts: GGACATTTGGAACTCAAACTATAAAATAGGCTATTTGCCCTCTCTAATCAGGTGTATTTCAGGGCTGGGGATGTCAGAATAGAAAATAGATCCTTTGCCCATAATTCCAAAATCCAGACTCTATTTCAAGACTTGAGCCTCTATTTCGAAGTCTTCCGTTTCTTCCGGAAGAAATCCGAGCAAACAACAGTGTTCCGAGATTGTGGGAGGGCGGTTATTCGCATTCAAAAGAAGTCCCGCTTGCTTCTTCGGGGTTACAAG_-_ATGGATCAAGAAAATCGGAATTTAGGTGCCGACAGCATCGGGTGCCAGCAATCCCCGGAAGGGCACACCCTCTGCAGCAACAACTGCGGCTTTTTCGGGAGCTCTTCAACAAGAAATCTGTGTTCCAAATGTTATAGGGATCTCATGATGAAGGAGGCACAAGCTTCCTCTGCAACGGCCGCCGTTGAACAGG

Fln Alignment:

sp_v1.1_unigene78714___MDQENRNLGADSIGCQQSPEGHTLCSNNCGFFGSSSTRNLCSKCYRDLMMKEAQASSATAAVEQ
A9NKD1_______________MDQENWNIGADGTGCQ-APEGHTLCANNCGFFGSSATRNLCSKCYRDLIMKEAQATSAMAAVEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain