SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78666

Length: 570 nt

UniGene Fasta

>sp_v1.1_unigene78666
CATTGAAGCTCTTGGAACCCCCCTCACAAACAAATACTCCGAGGGCATGCCTGGCAACAGATACTACGGTGGTAACGAATACATAGATCTCATTGAAAATCTGTGCAGCCCTACTCTGGGAGCCCCGCTAACTTCGCAGCCTACACAGCCCTGCTGAACCCACATGACCGCATCATGGGGCTGGATTTGCCTTCTGGTGGCCATCTCACTCATGGATATTACACCTCTGGTGGCAAGAAGATTTCTGCTACATCTATTTACTTTGAGAGTTTGCCTTACAAGGTCAGCCAGGAGACTGGGTTCATTGATTATGACAAGCTGGAGGAGAAAGCCTTGGATTTCAGGCCTAAGCTTATTATATGTGGAGGAAGTGCTTATCCCAGGGACTGGGATTATGCTAGGTTCCGTTCCATTGCTGACAAATGTGGTGCCATGCTCTTATGTGATATGGCTCTTAAGCAGGTTATGACTCCTGGTTTTAAGGCCTATGCCAAGCAGGTCAAGGCAAATGCGGTTGCTGTTGGTAACTACTTGATGAACAAGGGATACAAGCTTGTTACAAGTGGGACA

Ace file of the UniGene sp_v1.1_unigene78666

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine hydroxymethyltransferase n=1 Tax=Picea sitchensis RepID=B8LLP6_PICSI	-	-	99%
FL-Next	sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	serine hydroxymethyltransferase	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	small molecule metabolic process	GO:0044281	Biological Process	96%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	96%
Blast2go	transferase activity	GO:0016740	Molecular Function	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Blast2go	Serine hydroxymethyltransferase	IPR001085	-	96%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	96%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	96%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLP6

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 129 aas, your sequence is shorter than subject: 191 - 470

Fln protein: IEALGTPLTNKYSEGMPGNRYYGGNEYIDLIExxxxPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCxxxxLKQVMTPGFKAYAKQVKANAVAVGNYLMNKGYKLVTSGT

Protein Length: 192

Fln nts: CATTGAAGCTCTTGGAACCCCCCTCACAAACAAATACTCCGAGGGCATGCCTGGCAACAGATACTACGGTGGTAACGAATACATAGATCTCATTGAAxxxxxxxxxxxxCCCTACTCTGGGAGCCCCGCTAACTTCGCAGCCTACACAGCCCTGCTGAACCCACATGACCGCATCATGGGGCTGGATTTGCCTTCTGGTGGCCATCTCACTCATGGATATTACACCTCTGGTGGCAAGAAGATTTCTGCTACATCTATTTACTTTGAGAGTTTGCCTTACAAGGTCAGCCAGGAGACTGGGTTCATTGATTATGACAAGCTGGAGGAGAAAGCCTTGGATTTCAGGCCTAAGCTTATTATATGTGGAGGAAGTGCTTATCCCAGGGACTGGGATTATGCTAGGTTCCGTTCCATTGCTGACAAATGTGGTGCCATGCTCTTATGTGAxxxxxxxxxTCTTAAGCAGGTTATGACTCCTGGTTTTAAGGCCTATGCCAAGCAGGTCAAGGCAAATGCGGTTGCTGTTGGTAACTACTTGATGAACAAGGGATACAAGCTTGTTACAAGTGGGACA

Fln Alignment:

sp_v1.1_unigene78666___IEALGTPLTNKYSEGMPGNRYYGGNEYIDLIENLCxxxxxxxxxxxxxxxxxSVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCDMAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMALKQVMTPGFKAYAKQVKANAVAVGNYLMNKGYKLVTSGT
B8LLP6_______________IEALGTPLTNKYSEGMPGNRYYGGNEFIDLIENLCxxxxxxxxxxxxxxxxxNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCDMAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVALKQVMTPGFKAYAKQVKANAVAVGNYLMNKGYKLVTSGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain