SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78639

Length: 470 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene78639
CGTCGTGACCTTGGCTGTCACTCAATTGCACTGGCTATCTAACCAGCCCTCTGCACTATATATACATCCCAACGTCGTGACCTTGGCTGTCACTCAAATTTTTGTACTCTCTCAGTCCTCTGTTGGTCGAACCAGAGTTGTGGTCCTTTCAGTGATTCAATCAGATTTTAAGCAAAGCAGAGCACCCTGCAGACTTAATTCAATTGAAGATGACAATCACCGTTCAAGATCCCCTCCTAGAAGGAAATGAGATCAACGAAACTCAAACAGGCCAGGACGAAGTTGACCATTCACAATCCCACGTTCTTCAATTGGATGGTGGTTTTGTCACACCAGACAGCAATGCCTTCGGCCATGATTTCAGAAACTATGAAAACGAAAGCGAGAGGCAGGCTGGTGTGCAAGAGTTTTACAGACTTAATCACATCAACCAGACATATGATTACGCATTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene78639

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable inositol oxygenase n=3 Tax=Oryza sativa RepID=MIOX_ORYSJ	-	-	2.0e-15	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	myo-inositol oxygenase	-	-	1.52406e-25	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol oxygenase.	EC:1.13.99.1	-	1.52406e-25	65%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		1.52406e-25	65%
Blast2go	Inositol phosphate metabolism	00562		1.52406e-25	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	1.52406e-25	65%
Blast2go	syncytium formation	GO:0006949	Biological Process	1.52406e-25	65%
Blast2go	inositol oxygenase activity	GO:0050113	Molecular Function	1.52406e-25	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Inositol oxygenase	IPR007828	-	1.52406e-25	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU49

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 224 aas, your sequence is shorter than subject: 85 - 316

Fln protein: MTITVQDPLLEGNEINETQTGQDEVDHSQSHVLQLDGGFVTPDSNAFGHDFRNYENESERQAGVQEFYRLNHINQTYDYAFRSE*

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGCACTGGCTATCTAACCAGCCCTCTGCACTATATATACATCCCAACGTCGTGACCTTGGCTGTCACTCAAATTTTTGTACTCTCTCAGTCCTCTGTTGGTCGAACCAGAGTTGTGGTCCTTTCAGTGATTCAATCAGATTTTAAGCAAAGCAGAGCACCCTGCAGACTTAATTCAATTGAAG_-_ATGACAATCACCGTTCAAGATCCCCTCCTAGAAGGAAATGAGATCAACGAAACTCAAACAGGCCAGGACGAAGTTGACCATTCACAATCCCACGTTCTTCAATTGGATGGTGGTTTTGTCACACCAGACAGCAATGCCTTCGGCCATGATTTCAGAAACTATGAAAACGAAAGCGAGAGGCAGGCTGGTGTGCAAGAGTTTTACAGACTTAATCACATCAACCAGACATATGATTACGCATTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene78639___MTITVQDPLLEGNEINETQTGQDEV-----DHSQSHVLQLDGGFVTPDSNAFGHDFRNYENESERQAGVQEFYRLNHINQTYDY
A9NU49_______________MTVIVQEPLLEGDEVNQTQIVSEEKRGNGDGPSESDILQLDGGFVTPDSNAFGHSFRDYDKESERRAGVQEFYRINHINQTYEY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
76		66		33	0.997471
77	33		66		0.997471
79	33		66		0.997471
80	66	33			0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain