SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78481

Length: 414 nt

UniGene Fasta

>sp_v1.1_unigene78481
CGTCGTGACCTTGGCTGTCACTCATTTTCATGGGCAATATTCCTTGGCAATGGTCTTGTAGCCATTATCTCTGGGTTGTTTGCCAATACCCTTGCTGACACTCTAGGCTTTGGTCCAGTTTCTCCGTTTGATGCTGCAGCATGCTTCTTAGCTATAGGGATGGCCATTATTTTCTCCACCTGGACAGAGAACTATGGAGATCCTTCAGAGAATAAGGATCTACTTACTCAGTTCAAGGGTGCTGCCACAGCTATTGCTTCAGGTAAGTGTTTAAAGTTTAAACTTTGTCATCTCCAAATATCTTGCCGTCTTTGAACTATATGTCAGATAGACGGATGATGGTAGAGCTTTTCCTTATGTTTAGTCTTGACAACTATGTTGCTCATTTTGATGAGTAGATGAGAAGATTGCATT

Ace file of the UniGene sp_v1.1_unigene78481

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF791 domain containing protein	-	-	8.0e-37	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	major facilitator superfamily protein	-	-	3.93129e-34	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.93129e-34	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF791	IPR008509	-	3.93129e-34	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMA4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 153 aas, your sequence is shorter than subject: 105 - 449

Fln protein: RRDLGCHSFSWAIFLGNGLVAIISGLFANTLADTLGFGPVSPFDAAACFLAIGMAIIFSTWTENYGDPSENKDLLTQFKGAATAIASGKCLKFKLCHLQISCRL*

Protein Length: 106

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCATGGGCAATATTCCTTGGCAATGGTCTTGTAGCCATTATCTCTGGGTTGTTTGCCAATACCCTTGCTGACACTCTAGGCTTTGGTCCAGTTTCTCCGTTTGATGCTGCAGCATGCTTCTTAGCTATAGGGATGGCCATTATTTTCTCCACCTGGACAGAGAACTATGGAGATCCTTCAGAGAATAAGGATCTACTTACTCAGTTCAAGGGTGCTGCCACAGCTATTGCTTCAGGTAAGTGTTTAAAGTTTAAACTTTGTCATCTCCAAATATCTTGCCGTCTTTGAACTATATGTCAGATAGACGGATGATGGTAGAGCTTTTCCTTATGTTTAGTCTTGACAACTATGTTGCTCATTTTGATGAGTAGATGAGAAGATTGCATT

Fln Alignment:

sp_v1.1_unigene78481___SFSWAIFLGNGLVAIISGLFANTLADTLGFGPVSPFDAAACFLAIGMAIIFSTWTENYGDPSENKDLLTQFKGAATAIAS
B8LMA4_______________TFSKAIFLGNGLVAILAGLFANTLADTLGFGPVSPFDAAACFLAIGMAIILSTWTENYGDPSESKDLLTQFKGAAIAIAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain