SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78455

Length: 398 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene78455
CGTCGTGACCTTGGCTGTCACTCAGTTTTGTGGGAACTTATAACAGGAATGCTTCCCTTCCAGAACATGACAGCGGTGCAGGCAGCTTTTGCTGTTGTCAACAAGGGTGTAAGGCCAATTATCCCCCAGGATTGTCCCCCAGCATTGGCAGAAATCATGTCCCGGTGCTGGGATGCCAATCCTGATGTGAGGCCTTCCTTCAGTGAAGTGGTCAGAATGCTGGAAGAAGCACAGGGCATCAAAAACAGGTGTTTTGGGCTTGCTGTTTTTCACAGGCTAGTTTTGATAGAGGCTTGTTCATATGAATGTCTACAGTGATCTAAAACCAGAGCATAGACCCAGAAAAGGATTATTGGATGTGTGGAGAAAGACATAGGAGCATATCCTCTAATTATATA

Ace file of the UniGene sp_v1.1_unigene78455 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine/thronine protein kinase, putative (EC:2.7.11.25)	-	-	5.0e-28	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	protein	-	-	1.17244e-33	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	1.17244e-33	90%
Blast2go	Protein kinase-like domain	IPR011009	-	1.17244e-33	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTN3

Fln msg: your sequence is shorter than subject: 106 - 420

Fln protein: RRDLGCHSVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPQDCPPALAEIMSRCWDANPDVRPSFSEVVRMLEEAQGIKNRCFGLAVFHRLVLIEACSYECLQ*

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTGTGGGAACTTATAACAGGAATGCTTCCCTTCCAGAACATGACAGCGGTGCAGGCAGCTTTTGCTGTTGTCAACAAGGGTGTAAGGCCAATTATCCCCCAGGATTGTCCCCCAGCATTGGCAGAAATCATGTCCCGGTGCTGGGATGCCAATCCTGATGTGAGGCCTTCCTTCAGTGAAGTGGTCAGAATGCTGGAAGAAGCACAGGGCATCAAAAACAGGTGTTTTGGGCTTGCTGTTTTTCACAGGCTAGTTTTGATAGAGGCTTGTTCATATGAATGTCTACAGTGA___TCTAAAACCAGAGCATAGACCCAGAAAAGGATTATTGGATGTGTGGAGAAAGACATAGGAGCATATCCTCTAATTATATA

Fln Alignment:

sp_v1.1_unigene78455___VLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPQDCPPALAEIMSRCWDANPDVRPSFSEVVRMLEEAQG
C0PTN3_______________VLWELITGMLPFQNMTAVQAAFAVVNKGVRPAIPQDCPPALAEIMSRCWDANPDVRPSFSEVVRMLEEAQG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
219			83	16	0.994512
222			16	83	0.994513
225	16		83		0.994513
228			16	83	0.994512
231	16	83			0.994512
235	83		16		0.994512
236		83		16	0.994512
238	16		83		0.994512
239		16	83		0.994512
243	83		16		0.994512
336		33		66	0.997467
337		33	66		0.997467
338	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain