SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78396

Length: 510 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

>sp_v1.1_unigene78396
ATGGGGGGACGCTCCTTACTAAGCTGTTTTCTTTGCCTAAGTGGTTTTAATGGGCGGTATTTTGAGGTTAGGTGGAGCATTCATTCGTTCATAATTCACGTTCTGTGGAATTGACCTTTAGTCTCTATACGTCGTGACTTGGCTATTTGGGGGAGACATTGACCACTGTTAGCAAAGGTTTCACTGATCTAGCTTGTACAGAGCTCAAGGGGTTTCCTGGGATCACATCTTTTATTGATAAAGTATGAGTCCTCTTAAGGCTGTTGTTGTCTTGAATGGTGCTGCTGATGTCAAGGGGGTTGTTCAATTCACCCAGGAAGGAGATGATTCCTCTCTCTGGGCCACATTCGATAGTAGGACGAGCTGTAGTTGTCCATGCTGATCCAGATGATCTTGGCAAAGGTGGCCATGAACTGAGTAAGAGCACAGGAAATGCTGGTGGCAGACTTGCTTGCGGGGTTATCGGTCTTCAAGGATGAATATGAGCAGTTGGTTATTTATAGGCTGGTC

Ace file of the UniGene sp_v1.1_unigene78396

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=SODC_PINSY	-	-	1.0e-21	98%
FL-Next	sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine).	-	-	0.0	92%
Blast2go	copper-zinc superoxide dismutase	-	-	2.40522e-21	98%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Superoxide dismutase, copper/zinc binding domain	IPR001424	-	2.40522e-21	98%
Blast2go	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	2.40522e-21	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: P24669

Fln msg: Separated hits, possible frame ERROR between 325 and 327, your sequence is shorter than subject: 79 - 154

Fln protein: MSPLKAVVVLNGAADVKGVVQFTQEGxxIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVIGLQG*

Protein Length: 80

Fln nts: ATGGGGGGACGCTCCTTACTAAGCTGTTTTCTTTGCCTAAGTGGTTTTAATGGGCGGTATTTTGAGGTTAGGTGGAGCATTCATTCGTTCATAATTCACGTTCTGTGGAATTGACCTTTAGTCTCTATACGTCGTGACTTGGCTATTTGGGGGAGACATTGACCACTGTTAGCAAAGGTTTCACTGATCTAGCTTGTACAGAGCTCAAGGGGTTTCCTGGGATCACATCTTTTATTGATAAAGT_-_ATGAGTCCTCTTAAGGCTGTTGTTGTCTTGAATGGTGCTGCTGATGTCAAGGGGGTTGTTCAATTCACCCAGGAAGGAGAxxxGATTCCTCTCTCTGGGCCACATTCGATAGTAGGACGAGCTGTAGTTGTCCATGCTGATCCAGATGATCTTGGCAAAGGTGGCCATGAACTGAGTAAGAGCACAGGAAATGCTGGTGGCAGACTTGCTTGCGGGGTTATCGGTCTTCAAGGATGA___ATATGAGCAGTTGGTTATTTATAGGCTGGTC

Fln Alignment:

sp_v1.1_unigene78396___MSPLKAVVVLNGAADVKGVVQFTQEGDxIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVIGLQG
P24669_______________MGLLKAVVVLNGAADVKGVVQFTQEGDxIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
148	25	25	25	25	0.997387
149	50			50	1.0
150		25	50	25	0.995536
151	25		50	25	0.995536
152		50	50		1.0
153	25		50	25	0.995535

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain