SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78350

Length: 1057 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene78350 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	(-)-alpha-pinene/(-)-camphene synthase n=1 Tax=Pseudotsuga menziesii RepID=Q4QSN3_PSEMZ	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	cineole synthase	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Terpene synthase, metal-binding domain	IPR005630	-	0.0	86%
Blast2go	Terpenoid synthase	IPR008949	-	0.0	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRP7

Fln msg: Overlapping hits, possible frame ERROR between 144 and 141, your sequence is shorter than subject: 337 - 366

Fln protein: MGWMSYVNTEKLLELAKLEFNIFHSIQQRELKHISRWWKNSGFSQMxxxRHRHVEYYTLASCFAIDPEHSAFRVSFAKMCHLVTVLDDIYDTFGTMEELQLFTAAVKRWDPSATDSLPEYMKPVYTVLYETVNEMAQVAKKSQGRDTINYARHAWEAYLDSYMKEAEWISTGCIPTFEEYYENGKISLGYRISMLQPILSMDIPFPHHILQEIDYPSRFSSLAAGILRLKGDTRCYQADSARGEEASCISCYMKENPGLTEEDVVNHIHAMVDDLIKELNWELLKPDCNVPISSKKHAFDICRAVHHGYKYRDGYSVATNEIKDLVMITVLEPVPL*

Protein Length: 338

Fln nts: ATGGGATGGATGTCATACGTGAACACCGAAAAACTCTTAGAACTTGCAAAATTGGAGTTCAATATATTTCACTCCATACAACAAAGAGAGTTAAAACATATCTCCAGATGGTGGAAGAATTCAGGCTTCTCTCAAATGxxxxxxxxxCGCCACCGTCATGTCGAATACTACACTTTGGCCTCTTGCTTTGCGATTGATCCTGAACATTCTGCATTCCGAGTCAGTTTTGCCAAAATGTGTCATCTTGTCACTGTTCTGGATGATATCTATGACACCTTCGGAACGATGGAAGAGCTCCAACTCTTCACAGCAGCAGTTAAGAGATGGGATCCATCAGCGACAGACTCCCTTCCAGAATACATGAAACCAGTGTACACAGTGCTTTATGAAACCGTAAATGAAATGGCACAAGTGGCGAAGAAATCTCAAGGCCGAGATACCATCAACTATGCTCGACACGCTTGGGAAGCCTATCTTGATTCGTATATGAAAGAAGCAGAGTGGATCTCCACTGGTTGTATTCCAACATTCGAGGAGTACTACGAAAATGGAAAGATTAGTTTGGGTTATCGTATATCCATGTTACAACCGATCCTCTCGATGGACATTCCTTTTCCTCACCACATCCTACAAGAAATCGACTATCCATCCAGGTTCAGTAGCTTGGCGGCTGGCATCCTTCGACTTAAAGGTGACACTCGCTGTTACCAGGCAGATAGTGCCCGTGGAGAAGAAGCTTCATGCATATCATGTTATATGAAAGAGAATCCCGGATTAACAGAGGAAGATGTTGTCAATCATATCCATGCCATGGTCGATGACTTAATCAAAGAATTAAATTGGGAGCTTCTTAAACCAGACTGCAATGTTCCCATATCCTCTAAGAAACATGCTTTTGACATCTGCAGAGCTGTTCATCATGGCTACAAATACCGAGATGGCTACAGCGTCGCCACCAATGAAATAAAGGATTTGGTAATGATAACCGTTCTTGAACCTGTGCCTCTGTAATCACACGTTAGACCTAAAGTGATAACTGTATGTACCTTCTTGCCTGA

Fln Alignment:

sp_v1.1_unigene78350___MSYVNTEKLLELAKLEFNIFHSIQQRELKHISRWWKNSGFSQMNxCRHRHVEYYTLASCFAIDPEHSAFRVSFAKMCHLVTVLDDIYDTFGTMEELQLFTAAVKRWDPSATDSLPEYMKPVYTVLYETVNEMAQVAKKSQGRDTINYARHAWEAYLDSYMKEAEWISTGCIPTFEEYYENGKISLGYRISMLQPILSMDIPFPHHILQEIDYPSRFSSLAAGILRLKGDTRCYQADSARGEEASCISCYMKENPGLTEEDVVNHIHAMVDDLIKELNWELLKPDCNVPISSKKHAFDICRAVHHGYKYRDGYSVATNEIKDLVMITVLEPVPL
C0PRP7_______________MPYMNAKKLLELAKLEFNIFHSIQQNELKHISRWWKDSGLSLLNxARHRHVEYYTLASCFAIDPEHSTFRLGFAKICHLSTVLDDIYDTFGTMDELKLFTKAIKRWDPSTIEWLPEYMKGVYMVLYETVNELGREAKKSQGRDMINYVRRAWEAYIDSYMKEAEWISSGCVPTFEEYYENGKVSFGYRIATLQPILTLGIPFPQHILQQIDFPSRFNSLACGILRLKGDTRCYKADEERGEEASCISCYRKDNPGLTEEDVVNHIHAMVSDLIKELNWELLRPDSNVPISSKKHAFDITRAIHHGYKHRDGYSIANNEMKNLVMIIVLEPVPM

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
482			66	33	0.997456
483	66			33	0.997456
484	33			66	0.997457
496	33	66			0.997452
615		14		85	0.993533
637		42		57	1.0
638		42		57	1.0
656		14		85	0.993533
663	14			85	0.993533
698		16	83		0.994512
732		20		80	0.995493
747		80		20	0.995493
820	33		66		0.997452
859	66		33		0.997454
867		66	33		0.997456
868	66	33			0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain