SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78342

Length: 522 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene78342
CCTAACGGAAGCCATGCCCAATGGCCAACAAGTTGCAGTGAGGACTTATGGGGATTAGTTCTTCAAATGATAATGATTTCTGCAAAGATCAATACTCTGGTCGAAACCACCATGGTTTCTGCATAGATCAATACTCTGGTCAAAACCACCATCCACAATGGTTGGGGTTGTACTCAACCCATGACCCTTAGATTGTTGGGGTTTTACTCAACCCATGGTTCTAATCTTCTGCTCTATGAATACATGCCTAACGGAAGCCTGGGGGAGCTGCTGCATGGAAACAATGTTAGTCATCTGGAATGGGATATCAGATACAAAATTGTAGTGGAGCCTGCCAAGGGGTTGTGCTATCTTTGCTACTATGGTTAGCCACTTATCTTGCATCGTTACGTGAAAGTAGAGCAACATTCATGTGAAATCCAACTTTGAAATCCATGTTGCAGATTTCAAGTTCTTGCATCATTTCGGTGCCTACTAAATGTAAGTTTCAATTGCAGGCCCCTTTGCTACACAGCTCTATGG

Ace file of the UniGene sp_v1.1_unigene78342

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9T173_RICCO	-	-	2.0e-22	67%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	60%
Blast2go	protein kinase-coding resistance protein	-	-	7.92647e-23	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	7.92647e-23	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		7.92647e-23	77%
Blast2go	Metabolic pathways	01100		7.92647e-23	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	7.92647e-23	77%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	7.92647e-23	77%
Blast2go	gametophyte development	GO:0048229	Biological Process	7.92647e-23	77%
Blast2go	starch catabolic process	GO:0005983	Biological Process	7.92647e-23	77%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	7.92647e-23	77%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	7.92647e-23	77%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	7.92647e-23	77%
Blast2go	transferase activity	GO:0016740	Molecular Function	7.92647e-23	77%
Blast2go	cytosol	GO:0005829	Cellular Component	7.92647e-23	77%
Blast2go	nucleus	GO:0005634	Cellular Component	7.92647e-23	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	7.92647e-23	77%
Blast2go	Protein kinase-like domain	IPR011009	-	7.92647e-23	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 133 aas, your sequence is shorter than subject: 123 - 998

Fln protein: PNGSHAQWPTSCSEDLWGLVLQMIMISAKINTLVETTMVSA*INTLVKTTIHNGWGCTQPMTLRLLGFYSTHGSNLLLYEYMPNGSLGELLHGNNVSHLEWDIRYKIVVEPAKGLCYLCYYG*

Protein Length: 124

Fln nts: CCTAACGGAAGCCATGCCCAATGGCCAACAAGTTGCAGTGAGGACTTATGGGGATTAGTTCTTCAAATGATAATGATTTCTGCAAAGATCAATACTCTGGTCGAAACCACCATGGTTTCTGCATAGATCAATACTCTGGTCAAAACCACCATCCACAATGGTTGGGGTTGTACTCAACCCATGACCCTTAGATTGTTGGGGTTTTACTCAACCCATGGTTCTAATCTTCTGCTCTATGAATACATGCCTAACGGAAGCCTGGGGGAGCTGCTGCATGGAAACAATGTTAGTCATCTGGAATGGGATATCAGATACAAAATTGTAGTGGAGCCTGCCAAGGGGTTGTGCTATCTTTGCTACTATGGTTAGCCACTTATCTTGCATCGTTACGTGAAAGTAGAGCAACATTCATGTGAAATCCAACTTTGAAATCCATGTTGCAGATTTCAAGTTCTTGCATCATTTCGGTGCCTACTAAATGTAAGTTTCAATTGCAGGCCCCTTTGCTACACAGCTCTATGG

Fln Alignment:

sp_v1.1_unigene78342___STHGSNLLLYEYMPNGSLGELLHGNNVSHLEWDIRYKIVVEPAKGLCYLCYYG*PLILHRYVK
Q19AV8_______________SKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
171		28	71		1.0
174		28		71	1.0
182	71			28	1.0
183	71			28	1.0
184		71	28		1.0
185		71	28		1.0
190	71			28	1.0
192	28	71			1.0
195		28		71	1.0
221	85			14	0.993533
254		71	28		1.0
280		71	28		1.0
401	75			25	0.996473
406			80	20	0.995505

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain