SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78339

Length: 990 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene78339

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Casein kinase n=1 Tax=Beta vulgaris RepID=A2I5G0_BETVU	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	protein	-	-	97%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	97%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	97%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	97%
Blast2go	Protein kinase-like domain	IPR011009	-	97%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	97%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	97%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	97%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg: Distance to subject end: 261 aas, your sequence is shorter than subject: 220 - 481

Fln protein: MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPISHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT

Protein Length: 221

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTGATGTTGATTCGGAGTTTGCTTGCTCTATTTGCTCTTCCGCTTCCCCTATCTTTCTTCATTTTTAACTCCTGAAAGGTGGTTGGCTCACAATTCTCATACAAATACATACAGACAGATAGATCTGTCTACACCTAAAATGGTCATGGTGATGGTCAAGATTTGAGAAGATCTGTGTGTAAGATAACGATGCGGGAATGGATTCTTCTGCGATGAATAAATCCCTGGGAAAAGGCGAGGGATCGATTTGATTTGGGGCAAATTTTGTTATTTAGGGACGGTGAAGCGAGGTTATTAACTGTATGGG_-_ATGGAGCCTCGCGTGGGTAACAAATACAGACTCGGCCGCAAGATTGGCAGCGGCTCCTTTGGCGAGATCTATTTAGGTACTAATATTCAGTCCAATGAGGAGGTGGCGATCAAGCTGGAAAATGTGAAGACAAAGCATCCACAACTTGTATATGAGGCCAAGTTGTACAGGCTCCTTCAAGGAGGAACTGGTATTGCAAATGTAAGATGGTTTGGTGTGGAAGGTGACTATAATGTCCTTGTCATGGACTTGTTGGGACCGAGCCTTGAGGATCTCTTTAATTTCTGTAGTCGGAAGCTTTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAACAGGATTGAATTTGTGCATTCAAGATGCTTCCTTCATAGAGACGTCAAACCTGATAATTTTCTTATGGGTCTTGGTAGAAGAGCAAACCAGGTCTATGTAATTGATTTCGGACTTGCTAAAAAGTACAGAGATCCTATCAGTCACCAACACATTCCTTACAGAGAGAACAAAAATTTGACTGGAACCGCCCGATATGCAAGCATGAACACTCATCTTGGCATTGAGCAAAGTCGTAGAGATGATTTAGAATCTCTTGGATATGTTCTCATGTATTTTTTGAGGGGCAGTCTTCCATGGCAGGGTCTGAAAGCTGGTACC

Fln Alignment:

sp_v1.1_unigene78339___MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPISHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT
A9NUC1_______________MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPVSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
726	85		14		0.993533
767	85		14		0.993533
865		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain