SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78265

Length: 849 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene78265 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lipase, putative	-	-	9.0e-18	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	af479625_1eds1-like protein	-	-	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, class 3	IPR002921	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVM4

Fln msg: Distance to subject end: 396 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 235 - 650

Fln protein: MARSEFFCSENLLGACNLSRNVYRSVGDDPSYLRADLNETTVGIAFHGILDPHVFQATATKFGECQSGFLEWLKDGNNQPAFLHQGSLTQFHNLLNNPRFQEEVLEYGRGKNVLLTGHSMGGAIAALATLWMLDKHQQQHPDKPKSFFCITFGFPLIGDETLARGVRRKGWTDHFCHVVSGRDVISRVLLAPSISVSEALESFLPYLKRYLENAGDLHGSTDTPMEEALPQGSAE

Protein Length: 236

Fln nts: AGGTTCATATCCATAGGCTTGACTTTCTCTTTCTGGGTAGCTTTCCCGCTACCTTGGTTTCTCGTCTTATTAAATAAACTCTGATTTCGTTCACTGCCTATAGACTCTGCTTTCGTTCATTTTTTTGAACTCTATGACAGATTA_-_ATGGCTAGATCGGAGTTTTTTTGCTCGGAAAACTTGTTGGGTGCCTGCAATCTGTCTCGCAATGTTTACAGAAGCGTAGGCGATGATCCCAGCTATCTGAGGGCTGATTTAAACGAAACTACTGTTGGCATTGCTTTTCATGGCATTCTCGATCCCCATGTCTTCCAAGCAACAGCAACCAAGTTTGGAGAATGTCAAAGTGGTTTTCTGGAGTGGCTGAAAGATGGGAACAATCAACCAGCCTTTCTGCATCAGGGTTCGCTCACCCAATTTCACAACCTCTTGAATAATCCCAGATTTCAGGAAGAGGTCCTGGAATATGGAAGGGGTAAGAACGTATTGCTCACTGGTCACTCCATGGGCGGAGCTATTGCTGCCTTGGCCACGCTATGGATGTTGGATAAGCACCAGCAGCAGCACCCTGACAAGCCTAAATCTTTTTTCTGCATCACGTTTGGCTTCCCGTTGATTGGGGACGAAACTCTCGCACGAGGAGTTCGTCGCAAGGGGTGGACGGATCACTTCTGCCATGTTGTCTCAGGACGTGATGTCATCTCTAGGGTTTTGTTGGCTCCTTCCATATCGGTGTCTGAGGCCTTGGAATCATTTTTACCATATTTGAAGAGATACCTGGAGAATGCAGGGGATTTACATGGTTCCACTGACACACCCATGGAAGAAGCCCTTCCACAGGGCAGTGCTGAA

Fln Alignment:

sp_v1.1_unigene78265___ELYDRLMARSE-FFCSENLLGACNLSRNVYRSVGDDPSYLRADLNETTVGIAFHGILDPHVFQATATKFGECQSGFLEWLKDGNNQPAFLHQGSLTQFHNLLNNPRFQEEVL-EYGRGKNVLLTGHSMGGAIAALATLWMLDKHQQQHPDKPKSFFCITFGFPLIGDETLARGVRRKGWTDHFCHVVSGRDVISRVLLAPSISVSEALESFLPYLKRYLENAGDLHGSTDTPMEEALPQGSAE
A9NVM4_______________QLESRLMDGSQPLFSDSSLLGFCKLSHSFYRSGGDDPSYLRANISNDTVAFAFRGILDPRDFQATASKFGDSP---LEWMKDGNNQSASVHQGSLKQFLHLWNTSRLQEEARQEYEGGKTVVFTGHSMGGGIASLAALWMLNSQQQ--PGKPKSVFCITFGFPLIGDGTLARIVRRKGWTDQFCHVVLGHDVFSRVLLAPCISVREPLESLLPYLKRYPENVGDLLGSTDTTMEEALPEGSAE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
283		25		75	0.996473
296			75	25	0.996473
365	40		60		1.0
405		66		33	1.0
513			28	71	1.0
583		60	40		1.0
663		25		75	0.996473
729		33	66		0.997476
735	66			33	0.997452
736	66		33		0.997452
737	66	33			0.997452
738	66	33			0.997452
739	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain