SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78247

Length: 456 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene78247
CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAATCTTTTTGGGTTCTTTGTATTTGCTTTTGACTTGTCTAAACTACCGAGTGCTATATATCAGCAGGACTTGAGAGTGCATCCTCATATTTACCAGTGAGCACTTTGCTGTATTTGGCTCACTTGCAGAATGGGATCATCCGCTCCAATGGTTTTGATCCACGCCATTACTCTCTCATGGCTGTGGTTAAGCATCTCTGCTTCTCATGTAGTGCATACTGTTAATACAGCAAAAACAAGTATTCAACAGCCATATCGCACAGCCTACCATTTTCAGCCTCAAAAGAACTGGATGAATGACCCAAATGGGCCCATGTTCTACAAGGGATTCTATCATCTGTTCTACCAGTACAATCCTGAAGGAGCGGTGTGGGGAAATATTGTCTGGTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Ace file of the UniGene sp_v1.1_unigene78247

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-fructofuranosidase, insoluble isoenzyme CWINV1 n=3 Tax=Arabidopsis RepID=INV1_ARATH	-	-	1.0e-23	52%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme CWINV1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	beta-fructofuranosidase 1	-	-	2.40077e-23	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	2.40077e-23	77%

Source	KEGGs	Term	e value	Identity
Blast2go	Galactose metabolism	00052	2.40077e-23	77%
Blast2go	Starch and sucrose metabolism	00500	2.40077e-23	77%
Blast2go	Metabolic pathways	01100	2.40077e-23	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	2.40077e-23	77%
Blast2go	beta-fructofuranosidase activity	GO:0004564	Molecular Function	2.40077e-23	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	2.40077e-23	77%
Blast2go	Glycoside hydrolase, family 32, active site	IPR018053	-	2.40077e-23	77%
Blast2go	Glycosyl hydrolase family 43, five-bladed beta-propellor domain	IPR023296	-	2.40077e-23	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q43866

Fln msg: Distance to subject end: 479 aas, your sequence is shorter than subject: 96 - 584

Fln protein: MGSSAPMVLIHAITLSWLWLSISASHVVHTVNTAKTSIQQPYRTAYHFQPQKNWMNDPNGPMFYKGFYHLFYQYNPEGAVWGNIVWFAVSDRPLRL

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAATCTTTTTGGGTTCTTTGTATTTGCTTTTGACTTGTCTAAACTACCGAGTGCTATATATCAGCAGGACTTGAGAGTGCATCCTCATATTTACCAGTGAGCACTTTGCTGTATTTGGCTCACTTGCAGA_-_ATGGGATCATCCGCTCCAATGGTTTTGATCCACGCCATTACTCTCTCATGGCTGTGGTTAAGCATCTCTGCTTCTCATGTAGTGCATACTGTTAATACAGCAAAAACAAGTATTCAACAGCCATATCGCACAGCCTACCATTTTCAGCCTCAAAAGAACTGGATGAATGACCCAAATGGGCCCATGTTCTACAAGGGATTCTATCATCTGTTCTACCAGTACAATCCTGAAGGAGCGGTGTGGGGAAATATTGTCTGGTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

sp_v1.1_unigene78247___LTCRMGSSAPMVLIHAITLSWLWLSISASHVVH-----TVNTAKTSIQQPYRTAYHFQPQKNWMNDPNGPMFYKGFYHLFYQYNPEGAVWGNIVW
Q43866_______________MTKEVCSNIGLWLLLTLLIGNYVVNLEASHHVYKRLTQSTNTKSPSVNQPYRTGFHFQPPKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVW

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
101	90		10		0.999898
102			90	10	0.999898
104	90		10		0.999898
105			90	10	0.999898
113	90		10		0.999898
114		10	90		0.999898
116	90			10	0.999898

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain