SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78238

Length: 1049 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene78238

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial dicarboxylate carrier protein, putative n=1 Tax=Ricinus communis RepID=B9RJV4_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochondrial substrate/solute carrier	IPR018108	-	0.0	87%
Blast2go	Mitochondrial carrier domain	IPR023395	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSC7

Fln msg: Overlapping hits, possible frame ERROR between 296 and 293, W1: There is no M at the beginning,

Fln protein: LVSVIHLSFPYLLSLYKRGDKLVGLVTGRSGCDYGEQNIRPAFAFANVGAGLPAAELAPxxxVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVKKIAAGLLAGGIGAAVGNPADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISHDIMKDGLGTHVTASFSAGFVAAVASNPVDVIKTRIMNMNPKPGEPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPLLSFFRHSGAS*

Protein Length: 308

Fln nts: GTATTCTTACTAATTATTTTGGGTCACTTGAATTGCATATGTCTCAGAGGGCCATGATCGTGACGGCCTCGCAGCTGGCCTCCTATGATCAGTGAGATGAACCCCAGCTCTAATTGGTCTCTGTGATCCATCTTTCATTCCCTTATTTGCTTTCTTTATATAAACGAGGGGATAAATTAGTCGGTCTTGTAACAGGACGAAGCGGCTGTGATTACGGCGAGCAAAATATTCGCCCCGCATTTGCCTTTGCTAATGTGGGCGCTGGTTTACCAGCGGCGGAATTAGCCCCCxxxxxxxxxGTTGGTCCGATCTCTGTAGGAATCCGCGTGGTTCAGACGGAGGGGGTGTCTGCGCTCTTTTCTGGTGTCTCTGCGACAATGCTCCGGCAGGTCCTGTACTCGACCACTCGCATGGGCTTATATGAGATTCTGAAGGAGAAGTGGCGGGAGCCGGGTTCGAAACCGGGGAACCTGCCCCTTGTCAAGAAGATCGCCGCGGGGTTGCTCGCTGGCGGTATCGGCGCCGCTGTGGGTAACCCTGCAGATGTGGCGATGGTGAGGATGCAAGCCGATGGGCGCCTCCCGGTTGCCCAGAGGCGCAACTACACGAGCGTTGCCGACGCCATCGGTCGCATGGTTCGACAGGAGGGTGTCACTTCGCTGTGGACAGGGTCATCCTTAACGGTCCAGAGGGCCATGATCGTGACGGCCTCGCAGCTGGCCTCCTATGATCAGATCAAGGAGACCATCATCTCACATGATATTATGAAGGACGGTCTAGGCACGCATGTCACAGCTAGCTTCAGTGCAGGGTTTGTGGCTGCCGTGGCTTCGAATCCCGTGGACGTTATCAAGACCCGGATCATGAATATGAACCCTAAACCAGGAGAGCCTGCACCTTATTCCGGAGCCCTGGATTGTGCCATGAAGACCATAAAGGCGGAAGGCCCTATGGCTCTTTACAAGGGATTTATTCCCACTGTGACGAGACAAGGTCCTTTACTATCGTTCTTTCGTCACTCTGGAGCAAGTTAGGAAGTTAAAGATTCGA

Fln Alignment:

sp_v1.1_unigene78238___GEQNIRPAFAFANVGAGLPAAELAPxxVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLXXXXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISHDIMKDGLGTHVTXXXXXXXXXXXXXNPVDVIKTRIMNMNPKPGEPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGP
C0PSC7_______________GEQNVRPAFAFANVGAGCPAAELAHxxVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVKKIAAGLTAGGIGAAVGNPADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISRDIMKDGLGTHVTASFSAGFVAAVASNPVDVIKTRIMNMNPKPGQPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
758		10		90	0.90298
894	20		80		0.995505

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain