SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78233

Length: 1045 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene78233 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	gdp-mannose 4,6-dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	GDP-mannose 4,6-dehydratase.	EC:4.2.1.47	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	89%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	89%
Blast2go	Metabolic pathways	01100	89%

Source	ECs	Term	Type	e value	Identity
AutoFact	GDP-mannose 4,6-dehydratase.	EC:4.2.1.47	-	0.0	80%

Source	KEGGs	Term	Identity
AutoFact	Fructose and mannose metabolism	00051	80%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520	80%
AutoFact	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	'de novo' GDP-L-fucose biosynthetic process	GO:0042351	Biological Process	89%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	GDP-mannose 4,6-dehydratase activity	GO:0008446	Molecular Function	89%
Blast2go	cytosol	GO:0005829	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2P2

Fln msg: Warning!, your query overlaps and the subject is separated, and possible frame ERROR between 667 and 673, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 241 - 351

Fln protein: S*PWLSLILLKKNYEVHGIIRRSSNFNTQRLDHIYIDPHNTQARMKLHYGDLTDASSLRKWVDAICPDEVYNLAAQSHVGVSFENPDYTADVVATGALSLLEAVRIHIENTGRKVKYYQAGSSEMYGATPPPQNENTPFHPRSPYAVSKLAAHWYSVNYREAYGMFASNGILFNHESPRRGENFVTRKITRAVGRIKxxxxxxxxxxxxVAMMVDSDLELAxxxEKVLVDAGYIDSQQQP*

Protein Length: 242

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTCTAAAAAAGAACTATGAAGTGCATGGAATCATTCGTCGTTCTTCCAATTTCAACACACAGCGTCTTGATCATATATACATTGATCCCCACAATACCCAAGCTCGTATGAAGCTACACTATGGAGATCTGACTGACGCATCATCCCTCAGAAAATGGGTGGATGCAATCTGCCCAGATGAAGTCTACAACCTGGCTGCGCAGTCTCATGTTGGTGTCTCATTTGAGAACCCAGATTACACTGCTGATGTTGTAGCCACGGGGGCGCTAAGCCTCCTTGAAGCTGTGAGAATCCACATAGAGAACACAGGAAGGAAGGTCAAGTATTACCAAGCAGGATCCTCCGAAATGTATGGTGCCACACCCCCACCTCAGAATGAGAACACCCCCTTCCACCCGAGAAGTCCTTATGCTGTCTCCAAGCTTGCAGCCCATTGGTATTCTGTCAATTACAGAGAAGCATATGGAATGTTTGCCTCCAATGGGATCCTCTTCAATCATGAATCCCCAAGGAGAGGTGAGAACTTTGTGACAAGGAAGATCACCAGGGCTGTGGGGAGGATCAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGGCCATGATGGTGGATTCTGACTTGGAGTTGGCCAxxxxxxGGGAGAAGGTTCTTGTTGATGCTGGATACATTGATTCTCAACAGCAGCCCTGAGGGATCAATATAATACTGATGACACTTTGTTCTTGCATGTGGGAAGTCATAATGGATTTGCCCTGCCTCTTTAGCAGCATTTATTTTGACGTTGGGACTAGATGCAGCACACGGGTCCATTGAATAAATCAGGCTCTTTGATAGCTTTTTCCTGATCCATTTATGCTAGTCTTTAACAACTTCTAGAACTAGATCCAGATTTATGTCACTCCTATTTCTTTGTAAGGTTTCATTTTCAGATATTTTTATGTTGTTAACTATTTTATTAAAATTGTACCAGCCTTTGATCTGATGATTATGTTGAATGGATGAGAGTTTCTGC

Fln Alignment:

sp_v1.1_unigene78233___WLSLILLKKNYEVHGIIRRSSNFNTQRLDHIYIDPHNTQARMKLHYGDLTDASSLRKWVDAICPDEVYNLAAQSHVGVSFENPDYTADVVATGALSLLEAVRIHIENTGRKVKYYQAGSSEMYGATPPPQNENTPFHPRSPYAVSKLAAHWYSVNYREAYGMFASNGILFNHESPRRGENFVTRKITRAVGRIKIGLQKKLDLSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWASEEVGFKQLVAMMVDSDLELAKxxEKVLVDAGYIDSQQQP
A9P2P2_______________YLTEFLLKKNYEVHGIIRRSSNFNTQRLDHIYIDPHNTQARMKLHYGDLTDASSLRKWVDAICPDEVYNLAAQSHVGVSFENPDYTADVVAKGALSLLEAVRIHIENTGRQVKYYQAGSSEMYGATPPPQNENTPFHPRSPYAVSKLAAHWYSVNYREAYGMFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQKKLYLGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWAPK-VGFKQLVAMMVDSDLELAKxxEKVLVDAGYIDSQQQP

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
982		75		25	0.996473
993	25			75	0.996473
994			25	75	0.996473
998	25			75	0.996473
1005			25	75	0.996473
1006	25			75	0.996473
1008	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain