SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78232

Length: 1478 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene78232

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to Heat shock 70 kDa protein, mitochondrial; K04043 molecular chaperone DnaK	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	heat shock 70 protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	response to virus	GO:0009615	Biological Process	89%
Blast2go	response to salt stress	GO:0009651	Biological Process	89%
Blast2go	response to heat	GO:0009408	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	cell wall	GO:0005618	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein Hsp70	IPR001023	-	89%
Blast2go	Heat shock protein 70	IPR013126	-	89%
Blast2go	Heat shock protein 70, conserved site	IPR018181	-	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLU0

Fln msg: your sequence is shorter than subject: 385 - 709

Fln protein: RRDLGCHSGLAKVERGCREGEGGIVIFVVTLAVTQFITADASGAKHLNITLTRSKFENLVNHLIERTRDPCKNCLKDAGVSIKEVDEVLLVGGMTRVPKVQEIVSEIFGKQPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADGQTQVGVRVLQGEREMASDNKLLGEFELVGIPPAPRGVPQIEVTFDIDANGIVTVSAKDKATNKEQNITIRSSGGLTEDEIQKMVREAEMHAQKDQEKKALIDARNAADSTIYSVEKSLSEYKDKLSSDVISEIESAVTDLKKAMANDDVEDIKAKTDAATAASLKIGQSVQQQSGGSSSGSQGGSQGGDQAPEAEYEEVKK*

Protein Length: 386

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCCTTGCAAAGGTTGAGAGAGGCTGCAGAGAAGGCGAAGGTGGAATTGTCATCTTCGTCGTGACCTTGGCTGTCACTCAATTTATCACAGCAGATGCATCTGGGGCCAAGCATTTGAATATCACTTTAACTCGGTCAAAGTTTGAAAATTTGGTTAATCACTTAATTGAGAGAACCAGAGATCCTTGCAAGAATTGCTTGAAAGATGCGGGGGTCTCAATAAAGGAAGTGGATGAAGTGCTTCTTGTAGGAGGTATGACTCGAGTGCCTAAGGTTCAAGAAATTGTATCAGAGATCTTTGGTAAGCAACCAAGTAAAGGTGTGAACCCTGATGAGGCCGTTGCCATGGGTGCTGCCATTCAGGGTGGTATACTTCGTGGTGATGTGAAAGAGTTACTTCTTCTTGATGTTACTCCTCTGTCCTTGGGAATTGAAACTCTTGGTGGTGTATTTACACGGCTTATCAACAGAAACACCACAATTCCAACAAAGAAAAGTCAGGTGTTTTCAACTGCCGCAGATGGTCAAACTCAGGTAGGAGTGAGAGTATTGCAAGGTGAGCGTGAAATGGCTTCAGATAATAAGCTGCTTGGTGAGTTCGAGCTTGTTGGCATTCCACCAGCACCCAGAGGTGTACCTCAAATAGAGGTTACCTTCGACATTGATGCAAATGGTATTGTGACTGTATCTGCTAAAGACAAAGCCACAAACAAGGAACAGAATATCACTATCCGGTCGTCTGGAGGACTGACAGAAGACGAGATACAGAAAATGGTGAGAGAGGCTGAGATGCATGCTCAAAAAGATCAGGAAAAGAAGGCATTAATCGATGCTAGAAATGCTGCAGACAGCACGATATACTCAGTAGAGAAGAGTTTGAGCGAATATAAAGACAAACTTTCTTCAGATGTCATTTCTGAAATAGAGTCAGCTGTAACAGACTTAAAGAAAGCAATGGCTAATGATGATGTTGAAGATATCAAAGCAAAAACTGATGCAGCAACTGCAGCATCCTTGAAAATAGGCCAGAGTGTGCAGCAACAATCTGGTGGCTCATCGTCTGGTTCTCAAGGTGGATCTCAAGGCGGAGACCAGGCACCAGAGGCTGAATATGAAGAGGTCAAGAAGTGA___TTTAGGCAATTGAGGTCGAATCTGAGGTTATCTAGGAGATGCTAGGTACAAAATTACTAGTTTGAAAATTCAAAACTGTTATAAGCAAATATTTAGATTTGCTTAATGCGGGCATTTTTGTTCTGAGCAAGAAATATTATTTTTTCCATGTTATGACTGTTGACTCTGAACAGGAGAAATCTGTAGTTTATCATATTTGAACTCTACAAAATTCTTCTCTAGAGCTACTCTTTTGTTCTTTAATGACTGTTACCTTATTCAAGTGGTCATGATTTTGTCGTGGTGTTTGCGTGGAGTATCTGAGCTTTTTTGATTAAGATCCA

Fln Alignment:

sp_v1.1_unigene78232___FITADASGAKHLNITLTRSKFENLVNHLIERTRDPCKNCLKDAGVSIKEVDEVLLVGGMTRVPKVQEIVSEIFGKQPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADGQTQVGVRVLQGEREMASDNKLLGEFELVGIPPAPRGVPQIEVTFDIDANGIVTVSAKDKATNKEQNITIRSSGGLTEDEIQKMVREAEMHAQKDQEKKALIDARNAADSTIYSVEKSLSEYKDKLSSDVISEIESAVTDLKKAMANDDVE
B8LLU0_______________FITATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENSLRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVKDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAAVDKGTAKKQDITITGASTLPTDEVEKMVKEAERFSKEDKEKREAIDTKNQADSVVYQTEKQLKELGEKVPAEVKDKVEAKLKELKDAIASGSTQ

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1046	10		90		0.90298
1047		90		10	0.90298
1049	10			90	0.90298
1050		90	10		0.90298
1051		90	10		0.90298
1053	10			90	0.90298
1055		10	90		0.90298
1057	90		10		0.90298
1435	66		33		0.997452
1441	33	33			0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain