SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78228

Length: 1300 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene78228

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CCT_2 domain containing protein	-	-	7.0e-06	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ92

Fln msg: Warning!, your query overlaps and the subject is separated,

Fln protein: MQWKFGDLSEQLSLEAMSPNGSVAFEYLRVQNASETIRTAVDGSNSLEFGTEKHQARTRFMQHLSRVKPEMMLKLISSNKQSEDKKVEIMEFFPLSTGFGSNPRVIESNISLPSEIGLTNPNSSRFVVAEVPEKISTSQFTIFxxxxxxxxxxLASANSSSNITTSKITSGKIEDISGQQPSKSALNAVSENQSQKVAAGLEIVKKLSLQRFLQKRKARLNSVAPYSTMETASLPSKAGKDSDEHIILSLGCP*

Protein Length: 255

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGGCACGTCGTGACCTTGGCTGTCACTCAATAGGGTCGGAAAAAGGGTAGATTA_-_ATGCAGTGGAAATTTGGTGATTTGTCAGAACAATTGAGTTTGGAAGCTATGTCGCCAAATGGATCTGTGGCTTTCGAGTATCTACGCGTTCAGAACGCCTCTGAAACAATCCGAACGGCTGTGGATGGCAGTAATAGTTTGGAATTCGGTACTGAAAAACACCAAGCCAGGACGAGATTCATGCAACATCTGTCGCGGGTAAAACCTGAGATGATGCTAAAGTTGATTTCATCGAACAAACAGTCAGAGGACAAGAAGGTCGAAATTATGGAATTTTTTCCATTAAGCACCGGTTTCGGTTCAAACCCAAGAGTTATAGAATCAAATATAAGCTTGCCTTCGGAAATCGGCCTCACTAATCCGAATTCCAGTCGGTTCGTTGTAGCAGAAGTGCCGGAGAAAATATCCACATCTCAGTTTACTATTTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTGCAAGCGCCAATAGCTCGAGCAACATAACAACATCTAAGATTACCAGCGGCAAAATTGAAGATATATCGGGACAGCAGCCTTCCAAATCTGCATTGAACGCTGTGAGTGAAAATCAATCTCAAAAAGTGGCAGCAGGCTTGGAAATAGTGAAGAAATTATCTCTGCAACGCTTCCTCCAAAAGCGAAAGGCGAGATTGAACAGCGTGGCTCCTTACAGCACGATGGAGACGGCGTCATTGCCTTCGAAAGCAGGGAAGGATTCCGATGAACATATCATACTGTCGTTGGGTTGTCCGTGA___CAGCAAATTTAAAATGTGGGTGGGTGCTATCGACTTCTAATGGCATCAACGGGAATTTTCGCCCTTTTAATCGAGGGAACGAACGCGTTTGCGTACTGCCGATGACGGCAACGCGTTTTCCGTACTGCGAACCTTGAGCAGAGTGTGACAGGTGAAGCTCACCGGGCATGGGCGGCAGAGGAAAGCGCAACTTGCAAGGTCAAGGGAGCTTCGTGGCAAGTGGCATGTAATTGCAAAGCAATTTCTTCATGTGCACCACAGCAGGCATGTGAATATTAATTTGTTCAAATCCTTTCCTGCATCGCCACTTGCATGCGAATGTACTATATTATATAATGTAATAAGTTTGATCTTTCTAAAATTAAAAGGTTTATCTAAAGTTATTTCAAATCCGTCGACAATGGATTCCGCGATTACTCTTATCATCGCAGGATGCACTTACGCTACATCACCAAAAAT

Fln Alignment:

sp_v1.1_unigene78228___MSPNGSVAFEYLRVQNASETIRTAVDGSNSLEFGTEKHQARTRFMQHLSRVKPEMMLKLISSNKQSEDKKVE----------------------IMEFFPLSTGFGSNPRVIESNISLPSEIGLTNPNSSRFVVAEVPEKISTSQFTIFFSEGSRHYExxSRKVQDIMKLXXXXXXXXXXXXXXXXXXXEDISGQQPSKSALNAVSENQSQKVAAGLEIVKKLSLQRFLQKRKARLNSVAPYSTMETASLPSKAGKDSDEHIILSLGCP
A9NQ92_______________MSPSASVAFEYLRFQNASEANETVLNGSNSLEFSPGKHQAKPRLMQDLSRIKPQMMLKLLSSNKLSEDTKLDFAHVNRQAEGFNKQSEATSHAKMIELFPVSTGFGSDPRVTETKITLPLEIGLTDPNSSRCVLAEVPAKPSTAQLTIFYNGAVNVYDxxAEKAQEIMKLASANSSSNTRISTITSSKIEQILQHQPSKPALNAINENQPQRLAVGMEIVMKLSLQRFLQKRKERLNSVAPYSTMETETSPWKAGKDSDDQIILSLGCP

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
880		20	80		0.995493
885	14			85	0.993533
886	71	28			1.0
887			14	85	0.993533
888		85		14	0.993533
892		14		85	0.993533
894		85		14	0.993533
895			14	85	0.993533
896	85		14		0.993533
897	85	14			0.993533
900			85	14	0.993533
948			85	14	0.999981
949		85		14	0.999981
953		85		14	0.999981
955	14		85		0.999981
972			50	42	1.0
988	84		15		0.999986
992			16	83	0.999991
1038		22	77		0.999999
1056		22	77		0.999999
1073			77	22	0.999999
1086	22			77	0.999999
1094	55		44		1.0
1132		12		87	0.992554
1179	20	80			0.995493
1187	20	80			0.995493
1194	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain