SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78223

Length: 1109 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene78223 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Triosephosphate isomerase n=2 Tax=Picea sitchensis RepID=A9NUV2_PICSI	-	-	93%
FL-Next	sp=Triosephosphate isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	triosephosphate isomerase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triose-phosphate isomerase.	EC:5.3.1.1	-	0.0	92%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	92%
Blast2go	Fructose and mannose metabolism	00051	92%
Blast2go	Inositol phosphate metabolism	00562	92%
Blast2go	Carbon fixation in photosynthetic organisms	00710	92%
Blast2go	Metabolic pathways	01100	92%
Blast2go	Biosynthesis of secondary metabolites	01110	92%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organism reproduction	GO:0032504	Biological Process	92%
Blast2go	primary root development	GO:0080022	Biological Process	92%
Blast2go	triglyceride mobilization	GO:0006642	Biological Process	92%
Blast2go	glycerol catabolic process	GO:0019563	Biological Process	92%
Blast2go	chloroplast organization	GO:0009658	Biological Process	92%
Blast2go	glyceraldehyde-3-phosphate biosynthetic process	GO:0046166	Biological Process	92%
Blast2go	triose-phosphate isomerase activity	GO:0004807	Molecular Function	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%
Blast2go	thylakoid	GO:0009579	Cellular Component	92%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	92%
Blast2go	apoplast	GO:0048046	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	Triosephosphate isomerase	IPR000652	-	92%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	92%
Blast2go	Triosephosphate isomerase, active site	IPR020861	-	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM02

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 288 - 328

Fln protein: IPLLIASLKTERIP*QVCFLLKQR*RQIIGQSREVGHK*D*TSRENAYKGFHCKACY*IEQCKT*R*R*SWL*RLTSVYIDQVKSSLIDRIEISAQNSWVGKGGAFTGEISVEQLNDIGCKWVIHGHSERRHVIGEDNQFIGKKSAYAVMQGLKVIACIGEKLEEREAGKTFDVCYEQLKAFADNVPSWDDVVIAYEPVWAIGTGKVASPQQAQEVHIAVREWLSKNVSAKVASQTRIIYGGSVNGGNCVELAKQEDIDGFLVGGASLKGPEFATICNSVTAKKVAA*

Protein Length: 289

Fln nts: TTATCCCTTTGCTTATTGCATCATTGAAGACGGAGAGAATCCCATAACAAGTTTGCTTCCTTTTAAAACAAAGATAGCGTCAGATCATTGGCCAGTCCAGGGAGGTGGGACACAAATGAGATTAGACATCTCGGGAAAATGCGTACAAAGGATTCCATTGCAAAGCTTGTTACTGAATTGAACAATGCAAAACTTGAAGAtGacGTTGAtcTTGgCTGTAGCgCCTCACaTcTGTTTAtaTTGACcAAGTGAAGAGCTCTTTAATTGATCGTATTGAAATTTCTGCCCAGAATTCATGGGTTGGAAAGGGTGGGGCTTTCACTGGAGAAATCAGTGTTGAACAACTAAACGATATTGGTTGTAAGTGGGTGATTCATGGGCATTCTGAGCGTAGACATGTCATTGGTGAGGATAATCAGTTTATTGGGAAAAAATCTGCATATGCAGTGATGCAGGGTCTGAAAGTGATTGCATGTATAGGGGAAAAGCTAGAAGAACGGGAAGCGGGGAAGACTTTTGATGTCTGTTATGAACAGCTAAAGGCATTTGCCGATAATGTTCCTAGCTGGGATGATGTGGTTATTGCATATGAACCTGTCTGGGCCATTGGTACAGGGAAAGTGGCTTCTCCTCAGCAGGCCCAGGAAGTTCATATAGCAGTCCGTGAATGGTTGAGCAAGAATGTTTCTGCTAAAGTTGCATCTCAAACTCGAATTATTTATGGGGGTTCTGTAAATGGAGGAAATTGTGTGGAATTGGCGAAACAGGAGGATATTGACGGCTTCCTTGTTGGTGGTGCTTCTTTGAAGGGGCCAGAATTTGCCACTATTTGCAACTCTGTCACTGCAAAGAAGGTGGCTGCTTGA___GATCATTGTAGTTATTCTACTTTATTAACAGCTAGGCTTATTACAAAGAGACATAAAGAAAGTGGCAGAGGGAAGCTTGATATATTCTGTCAATATTACAGCAGACACAATGTTCTCGTTTCAGCATAGTTACTGTATTCTTAGCAGTTATAATAAATACAGGAGAGCTTTGTGAGCCATAGATATCTTTCCTTTCAGTTTTGACACAAACCAATTATTAAAGAGTTGAACAATCTTCACGAC

Fln Alignment:

sp_v1.1_unigene78223___VYIDQVKSSLIDRIEISAQNSWVGKGGAFTGEISVEQLNDIGCKWVIHGHSERRHVIGEDNQFIGKKSAYAVMQGLKVIACIGEKLEEREAGKTFDVCYEQLKAFADNVPSWDDVVIAYEPVWAIGTGKVASPQQAQEVHIAVREWLSKNVSAKVASQTRIIYGGSVNGGNCVELAKQEDIDGFLVGGASLKGPEFATICNSVTAKKVAA
B8LM02_______________VYIDQVKSSLTDRIEISAQNAWVGKGGAFTGEISVEQLKDIGCKWVIHGHSERRHVIGEDSQFIGKKSAYALTQGLKVIACIGEKLEEREAGKTFDVCYEQLKAFADNVPSWDDVVIAYEPVWAIGTGKVASPQQAQEVHVAVREWLSKNVSAEVASQTRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFASICNSVTAKKVAA

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
116		12		87	0.992554
197		12		87	0.992554
252	12	75			0.975346
384		88		11	0.991528
385		88	11		0.991528
386	11	88			0.991528
387		88	11		0.991528
388	88			11	0.991528
389			11	88	0.991528
392	88		11		0.991528
393		11		88	0.991528
394	88			11	0.991528
399	11			88	0.991528
412		11	88		0.991528
414			11	88	0.991528
415		11	88		0.991528
419		88	11		0.991528
420			11	88	0.991528
422		11		88	0.991528
426	11	88			0.991528
427	88	11			0.991528
504		25		75	1.0
506		12		87	0.992554
508		87		12	0.992554
509		85	14		0.993533
535	80		20		0.995493
570	80	20			0.995493
571	80	20			0.995493
656		16		83	0.994512
657		83		16	0.994512
864		75		25	0.996473
865			25	75	0.996473
866	25			75	0.996473
867		75	25		0.996473
868	75			25	0.996473
869		75	25		0.996473
870	25			75	0.996473
871		25	25	50	0.995533
872	33		66		1.0
874		25		75	0.996473
875		75	25		0.996473
879			33	66	1.0
880	33	33	33		0.997753
881		25		75	0.996473
883	75	25			0.996473
886	75			25	0.996473
890	33		66		1.0
892		33		66	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain