SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78191

Length: 347 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene78191
CGTCGTGACCTTGGCTGTCACTCATATACTTCTTTGACCTTGGTTTCTATCCTTGATAGGGTTGTGGAGCAAATGCACATCCAACGCCCATACTGAAAACATTGTCCCTAGGCGGCCTTTTGTGCTATATTGTAACATTCTCCTTGGGCATGGGTGGAATTCCATGGATCATAATGTCAGAGATATATCCAATAAATATGAAAGGCATTGCTGGAAGTTTGGTGACCCTTGTCAGCTGGCTTGGCTCTTGGGTTATTACCATCACCTTCAACCTTTTTCTTACATGGAGTGCAGCGGGTTCATTCTTCATTTTCTCCCTGATTTGTGCATCTACAATGTTCTTCGTT

Ace file of the UniGene sp_v1.1_unigene78191

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ERD sugar transporter-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZF13_PICSI	-	-	1.0e-31	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	erd sugar transporter-like protein	-	-	1.43373e-31	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	transporter activity	GO:0005215	Molecular Function	1.43373e-31	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	General substrate transporter	IPR005828	-	1.43373e-31	80%
Blast2go	Major facilitator superfamily domain	IPR020846	-	1.43373e-31	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8F2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 35 aas, your sequence is shorter than subject: 115 - 501

Fln protein: S*PWLSLIYFFDLGFYP**GCGANAHPTPILKTLSLGGLLCYIVTFSLGMGGIPWIIMSEIYPINMKGIAGSLVTLVSWLGSWVITITFNLFLTWSAAGSFFIFSLICASTMFFV

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATACTTCTTTGACCTTGGTTTCTATCCTTGATAGGGTTGTGGAGCAAATGCACATCCAACGCCCATACTGAAAACATTGTCCCTAGGCGGCCTTTTGTGCTATATTGTAACATTCTCCTTGGGCATGGGTGGAATTCCATGGATCATAATGTCAGAGATATATCCAATAAATATGAAAGGCATTGCTGGAAGTTTGGTGACCCTTGTCAGCTGGCTTGGCTCTTGGGTTATTACCATCACCTTCAACCTTTTTCTTACATGGAGTGCAGCGGGTTCATTCTTCATTTTCTCCCTGATTTGTGCATCTACAATGTTCTTCGTT

Fln Alignment:

sp_v1.1_unigene78191___GCGANAHPTPILKTLSLGGLLCYIVTFSLGMGGIPWIIMSEIYPINMKGIAGSLVTLVSWLGSWVITITFNLFLTWSAAGSFFIFSLICASTMFFV
D5A8F2_______________GHANDTHLAALVTILALGGLLGYIATFSLGMGGIPWIIMSEIFPINMKGIAGSLVTLVAWFGSWVITVTFNYLLAWSAAGSFFIFAGVSASAVVFV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
45			33	66	0.997452
51		66		33	0.997452
54	33			66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain