SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78157

Length: 464 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene78157
ATGGGGGACCTAATGCTGCACCATTAAATCTGTTTCCACAGGGTCTTCCCAATTTAGGTGCTGCGGCAGGAGGTGGAGCTCTTGATTTTCTTCGAAATAACCCACAGTTCCAAGCTCTGCGTACAATGGTTCAGGCAAATCCCCAGATTCTTCAGCCAATGCTTCAGGAGCTTAGCAAACAGAATCCACAGCTAATGAGGTTGATACAAGATCATCAGGCTGAGTTTCTTCATCTGATAAACGAAGAAACAGATGGAAATGCCTCAGTCAATAAATGTCACACCAGAAGAACGGGAGGCAATAGAACGGCTTGAAGCTATGGGTTTTGATCGAGCTCTTGTCATAGAGGCTTTTTTGGCATGCGACAAGAATGAAGAATTGGCAGCAAACTATCTTTTGGAGCATGCTGCTGATTACGAAGATTGACAATTTTCTGTAAAGAATCTCTTCTAGAAGTCTTTGTA

Ace file of the UniGene sp_v1.1_unigene78157

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RAD23 n=2 Tax=Pinaceae RepID=B5M6R6_PINSY	-	-	89%
FL-Next	tr=RAD23; Pinus sylvestris var. mongolica.	-	-	98%
Blast2go	rad23-like protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	84%
Blast2go	proteasome binding	GO:0070628	Molecular Function	84%
Blast2go	ubiquitin binding	GO:0043130	Molecular Function	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock chaperonin-binding	IPR006636	-	0.0	84%
Blast2go	XPC-binding domain	IPR015360	-	0.0	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B5M6R6

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 142 - 390

Fln protein: GGPNAAPLNLFPQGLPNLGAAAGGGALDFLRNNPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEETDxxxPQSINVTPEEREAIERLEAMGFDRALVIEAFLACDKNEELAANYLLEHAADYED*

Protein Length: 143

Fln nts: ATGGGGGACCTAATGCTGCACCATTAAATCTGTTTCCACAGGGTCTTCCCAATTTAGGTGCTGCGGCAGGAGGTGGAGCTCTTGATTTTCTTCGAAATAACCCACAGTTCCAAGCTCTGCGTACAATGGTTCAGGCAAATCCCCAGATTCTTCAGCCAATGCTTCAGGAGCTTAGCAAACAGAATCCACAGCTAATGAGGTTGATACAAGATCATCAGGCTGAGTTTCTTCATCTGATAAACGAAGAAACAGATxxxxxxxxxCCTCAGTCAATAAATGTCACACCAGAAGAACGGGAGGCAATAGAACGGCTTGAAGCTATGGGTTTTGATCGAGCTCTTGTCATAGAGGCTTTTTTGGCATGCGACAAGAATGAAGAATTGGCAGCAAACTATCTTTTGGAGCATGCTGCTGATTACGAAGATTGACAATTTTCTGTAAAGAATCTCTTCTAGAAGTCTTTGTA

Fln Alignment:

sp_v1.1_unigene78157___GGPNAAPLNLFPQGLPNLXXXXXXXXLDFLRNNPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEETDGNxxxxxxxEMPQSINVTPEEREAIERLEAMGFDRALVIEAFLACDKNEELAANYLLEHAADYED
B5M6R6_______________GGPNAAPLNLFPQGLPNLGAAAGGGALDFLRNNPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEETDGDxxxxxxxEMPQSINVTPEEREAIERLEAMGFDRALVIEAFLACDKNEELAANYLLEHAADYED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain