SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78124

Length: 526 nt

Origin of reads: Biogeco_1 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene78124
CGTCGTGACCTTGGCTGTCACTCAATTTCTACCAGGACTTCGACATCATTGGGCTCCTGATCATGCCAGATTCCTCAATGGAGGCCAACAGATGCAGCTCTTGCTTGACCGAGCCTCAGGTGAGAGTGTACTCTACTAATTTCTATGGCTTATTAATTTCAAAGCTGCTGCTAAATGCTGAATTGTTTTATGATTACTTACAGAAGATTATGATATATATTACATATATGCAGGATCAGGCTTCGCCTCCAAGAAGAAGTTTCTGTTTGGCAACATTGGAATGCAAATAAAGTTGGTGCCCGGAGACTCAGCTGGAACTGTCACTGCTTACTATCTCTCTTCGAATGCAGGGCCAAAGCATGATGAAGTGGATTTCGAATTTCTGGGTAATGTGTCTGGGGAGCCTTACATCGTGCAGACGAACATATACGCCCATGGAATTGGCAAGAGAGAGCAACGCATTTATTTGTGGTTCGACCCCACTGCGGACTTTCACACATATTCCATTGAGTGGAACCCGCACCAC

Ace file of the UniGene sp_v1.1_unigene78124 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[G] COG2273 Beta-glucanase/Beta-glucan synthetase	-	-	1.0e-08	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	xyloglucan endotransglucosylase hydrolase	-	-	3.29388e-40	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	3.29388e-40	62%
Blast2go	Glycoside hydrolase, family 16, active site	IPR008263	-	3.29388e-40	62%
Blast2go	Beta-glucanase	IPR008264	-	3.29388e-40	62%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	3.29388e-40	62%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	3.29388e-40	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNK0

Fln msg: Distance to subject end: 121 aas, your sequence is shorter than subject: 175 - 275

Fln protein: VVTLAVTQFLPGLRHHWAPDHARFLNGGQQMQLLLDRASGESVLY*FLWLINFKAAAKC*IVL*LLTEDYDIYYIYAGSGFASKKKFLFGNIGMQIKLVPGDSAGTVTAYYLSSNAGPKHDEVDFEFLGNVSGEPYIVQTNIYAHGIGKREQRIYLWFDPTADFHTYSIEWNPHH

Protein Length: 176

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTACCAGGACTTCGACATCATTGGGCTCCTGATCATGCCAGATTCCTCAATGGAGGCCAACAGATGCAGCTCTTGCTTGACCGAGCCTCAGGTGAGAGTGTACTCTACTAATTTCTATGGCTTATTAATTTCAAAGCTGCTGCTAAATGCTGAATTGTTTTATGATTACTTACAGAAGATTATGATATATATTACATATATGCAGGATCAGGCTTCGCCTCCAAGAAGAAGTTTCTGTTTGGCAACATTGGAATGCAAATAAAGTTGGTGCCCGGAGACTCAGCTGGAACTGTCACTGCTTACTATCTCTCTTCGAATGCAGGGCCAAAGCATGATGAAGTGGATTTCGAATTTCTGGGTAATGTGTCTGGGGAGCCTTACATCGTGCAGACGAACATATACGCCCATGGAATTGGCAAGAGAGAGCAACGCATTTATTTGTGGTTCGACCCCACTGCGGACTTTCACACATATTCCATTGAGTGGAACCCGCACCAC

Fln Alignment:

sp_v1.1_unigene78124___WAPDHARFLNGGQQMQLLLDRASGESVLY*FLWLINFKAAAKC*IVL*LLTEDYDIYYIYAGSGFASKKKFLFGNIGMQIKLVPGDSAGTVTAYYLSSNAGPKHDEVDFEFLGNVSGEPYIVQTNIYAHGIGKREQRIYLWFDPTADFHTYSIEWN
A9NNK0_______________WAADHVKFLKGGEELHLTLDQVSG--------------------------------------SGFASKNKYLFGNINMQIKLVPGDSAGTVTAFYLSSQ-GLNHDELDFEFLGNKSGEPYVLQTNVYASGKGDREQRIYLWFDPSTEFHTYGVIWN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain