SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78101

Length: 437 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene78101
CGTCGTGACCTTGGCTGTCACTCAAGGTTTTCATAAGCGGATCTACTGAATAGACGATGAAGGCATTGATTTTAGGTTGGTGGGTTCGGGACCCGTCGTGTCCTTGGCTGTCATCGTTCCCAAGCCCCTCGTCGACTTCGCTAATAAGCCTATGATTTTGCATCAGATCGAAGCTCTGAAAGCAATTGGAGTTGATGAAGTTGTTTTGGCCATCAATTACCAGCCCGAGGTACAGAGTGATGCTGAGCTTTTTGAAGGAGTTTGAAGCAAAGGTTGGGATTAAGATCACATGCTCACAGGAGACTGAACCAATGGGCACCGCTGGGCCTTTGGCCCTTGCCAGGGACAAGCTGGATGATGGGTCTGGTGAGCCCTTCTTTGTACTCAACAGTGATGTCATCTGTGAGTACCCTTTGAAGCAGATGCTTGAATTTCAC

Ace file of the UniGene sp_v1.1_unigene78101

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GDP-mannose pyrophosphorylase n=4 Tax=Pinaceae RepID=A6N835_PINTA	-	-	2.8026e-45	89%
FL-Next	tr=GDP-mannose pyrophosphorylase; Pinus taeda (Loblolly pine).	-	-	0.0	93%
Blast2go	gdp-mannose pyrophosphorylase	-	-	0.0	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mannose-1-phosphate guanylyltransferase.	EC:2.7.7.13	-	0.0	94%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	94%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	94%
Blast2go	Metabolic pathways	01100	94%
Blast2go	Biosynthesis of secondary metabolites	01110	94%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	94%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	94%
Blast2go	response to ammonium ion	GO:0060359	Biological Process	94%
Blast2go	response to ozone	GO:0010193	Biological Process	94%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	94%
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	94%
Blast2go	response to heat	GO:0009408	Biological Process	94%
Blast2go	response to salt stress	GO:0009651	Biological Process	94%
Blast2go	mannose-1-phosphate guanylyltransferase activity	GO:0004475	Molecular Function	94%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A6N836

Fln msg: Separated hits, possible frame ERROR between 232 and 237, Distance to subject end: 236 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 130 - 361

Fln protein: IDDEGIDFRLVGSGPVVSLAVIVPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYQPExxxVMLSFLKEFEAKVGIKITCSQETEPMGTAGPLALARDKLDDGSGEPFFVLNSDVICEYPLKQMLEFH

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTTTTCATAAGCGGATCTACTGAATAGACGATGAAGGCATTGATTTTAGGTTGGTGGGTTCGGGACCCGTCGTGTCCTTGGCTGTCATCGTTCCCAAGCCCCTCGTCGACTTCGCTAATAAGCCTATGATTTTGCATCAGATCGAAGCTCTGAAAGCAATTGGAGTTGATGAAGTTGTTTTGGCCATCAATTACCAGCCCGAGGTxxxxxxAGTGATGCTGAGCTTTTTGAAGGAGTTTGAAGCAAAGGTTGGGATTAAGATCACATGCTCACAGGAGACTGAACCAATGGGCACCGCTGGGCCTTTGGCCCTTGCCAGGGACAAGCTGGATGATGGGTCTGGTGAGCCCTTCTTTGTACTCAACAGTGATGTCATCTGTGAGTACCCTTTGAAGCAGATGCTTGAATTTCAC

Fln Alignment:

sp_v1.1_unigene78101___LAVIVPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYQPEVxxVMLSFLKEFEAKVGIKITCSQETEPMGTAGPLALARDKLDDGSGEPFFVLNSDVICEYPLKQMLEFH
A6N836_______________LTLSVPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYQPEVxxVMLSFLKEFEAKVGIKITCSQETEPMGTAGPLALARDKLDDGSAEPFFVLNSDVICEYPLKQMLEFH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain