SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78081

Length: 388 nt

UniGene Fasta

>sp_v1.1_unigene78081
TATCGAAGATAAACCACACTTACCAATGTCATAGATCTGGATAAAAAGCTCCACATAATCATTAAATATATGCTTGATTATACTTATTCAGAGCTCTGACTTTTCAGTCTGCAATGGATTTATCACGCAGATCAAATGTCTGTTCCTGCTAATTCCCCGGCTGGGTTAACTGTGGTTGCCTTAACTCATGCTTTCGTGGTTTTTGCGATGATCTCTGCTGGATTCAGCATCTCGGGAGGACACCTGAACCCTGCGGTACACATTGGGTTTAGCAGTCGGGGGGCACATCTCCCTTATTAGGTCTCTTCTCTACTGGATTGCACAGCTGTTGGCTTCTGTACTTGCCTGCTTCCTCCTCAAGTTCCTCACTGGAGGCTCAGTAAGCTTA

Ace file of the UniGene sp_v1.1_unigene78081

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative tonoplast intrinsic protein n=1 Tax=Camellia sinensis RepID=D3GDK8_CAMSI	-	-	1.0e-18	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	tonoplast intrinsic protein	-	-	6.82936e-31	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Major intrinsic protein	IPR000425	-	6.82936e-31	82%
Blast2go	Aquaporin-like	IPR023271	-	6.82936e-31	82%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ31

Fln msg: Overlapping hits, possible frame ERROR between 282 and 260, Distance to subject end: 120 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 85 - 248

Fln protein: MSVPANSPAGLTVVALTHAFVVFAMISAGFSISGGHLNPAVxxxxxxxxxHISLIRSLLYWIAQLLASVLACFLLKFLTGGSVSL

Protein Length: 86

Fln nts: TATCGAAGATAAACCACACTTACCAATGTCATAGATCTGGATAAAAAGCTCCACATAATCATTAAATATATGCTTGATTATACTTATTCAGAGCTCTGACTTTTCAGTCTGCAATGGATTTATCACGCAGATCAA_-_ATGTCTGTTCCTGCTAATTCCCCGGCTGGGTTAACTGTGGTTGCCTTAACTCATGCTTTCGTGGTTTTTGCGATGATCTCTGCTGGATTCAGCATCTCGGGAGGACACCTGAACCCTGCGGTAxxxxxxxxxxxxxxxxxxxxxxxxxxxCACATCTCCCTTATTAGGTCTCTTCTCTACTGGATTGCACAGCTGTTGGCTTCTGTACTTGCCTGCTTCCTCCTCAAGTTCCTCACTGGAGGCTCAGTAAGCTTA

Fln Alignment:

sp_v1.1_unigene78081___DQMSVPANSPAGLTVVALTHAFVVFAMISAGFSISGGHLNPAVxxxxxxxxHISLIRSLLYWIAQLLASVLACFLLKFLTGG
B8LQ31_______________EQMSVPAKSPAGLTVVALAHAFAVFAMISAGFNISGGHLNPAVxxxxxxxxHITLIRSLLYWIAQLLASVLACFLLNFLTGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain